adding slow to pytest ini options

Only run cleanup if tests ran

Signed-off-by: Peter St. John <[email protected]>

.github/workflows/unit-tests.yml

@@ -116,7 +116,7 @@ jobs:
   clean-up:
     needs: run-tests
     runs-on: self-hosted-nemo-gpus-1
-    if: ${{ always() }}
+    if: ${{ success() || failure() }}
     steps:
       - name: clean up image
         run: docker rmi nemoci.azurecr.io/bionemo:${{ github.run_id }}

.secrets.baseline

@@ -139,9 +139,9 @@
         "filename": "pyproject.toml",
         "hashed_secret": "79670e9c9d1c7ea5b81a96a2053d81437712c78e",
         "is_verified": false,
-        "line_number": 47
+        "line_number": 43
       }
     ]
   },
-  "generated_at": "2024-11-01T22:26:03Z"
+  "generated_at": "2025-01-14T17:26:27Z"
 }

pyproject.toml

@@ -36,11 +36,7 @@ dependencies = [
 build = ['flash-attn', 'pip']
 
 [tool.uv.workspace]
-members = [
-    "3rdparty/*",
-    "sub-packages/bionemo-*/",
-    "internal/infra-bionemo/",
-]
+members = ["3rdparty/*", "internal/infra-bionemo/", "sub-packages/bionemo-*/"]
 
 [tool.uv.sources]
 # external
@@ -114,9 +110,10 @@ convention = "google"
 [tool.pytest.ini_options]
 norecursedirs = ["3rdparty"]
 addopts = ["--ignore=3rdparty"]
+markers = ["slow: marks tests as slow (deselect with '-m \"not slow\"')"]
 
 [tool.pyright]
-include = ["./scripts/", "./sub-packages/", "./internal/"]
+include = ["./internal/", "./scripts/", "./sub-packages/"]
 exclude = ["*/tests/"]
 executionEnvironments = [
     { "root" = ".", pythonVersion = "3.10", extraPaths = [