add pytest step for running documentation

Signed-off-by: Peter St. John <[email protected]>

.github/pull_request_template.md

@@ -11,10 +11,10 @@
 - [ ]  Other (please describe):
 
 ### CI Pipeline Configuration
-Configure CI behavior by checking relevant boxes below. This will automatically apply labels.
+Configure CI behavior by applying the relevant labels:
 
-- [ ] [SKIP_CI](https://github.com/NVIDIA/bionemo-framework/blob/main/docs/docs/user-guide/contributing/contributing.md#skip_ci) - Skip all continuous integration tests
-- [ ] [INCLUDE_NOTEBOOKS_TESTS](https://github.com/NVIDIA/bionemo-framework/blob/main/docs/docs/user-guide/contributing/contributing.md#include_notebooks_tests) - Execute notebook validation tests in pytest
+- [SKIP_CI](https://github.com/NVIDIA/bionemo-framework/blob/main/docs/docs/user-guide/contributing/contributing.md#skip_ci) - Skip all continuous integration tests
+- [INCLUDE_NOTEBOOKS_TESTS](https://github.com/NVIDIA/bionemo-framework/blob/main/docs/docs/user-guide/contributing/contributing.md#include_notebooks_tests) - Execute notebook validation tests in pytest
 
 > [!NOTE]
 > By default, the notebooks validation tests are skipped unless explicitly enabled.

.github/workflows/unit-tests.yml

@@ -100,6 +100,12 @@ jobs:
           BIONEMO_DATA_SOURCE: ngc
         run: ./ci/scripts/run_pytest.sh --no-nbval --skip-slow
 
+      - name: Run notebook tests
+        if: ${{ contains(github.event.pull_request.labels.*.name, 'INCLUDE_NOTEBOOKS_TESTS') }}
+        env:
+          BIONEMO_DATA_SOURCE: ngc
+        run: pytest --nbval-lax -p no:python docs/ sub-packages/
+
       - name: Upload coverage to Codecov
         uses: codecov/codecov-action@v5
         with:
@@ -120,6 +126,5 @@ jobs:
     steps:
       - name: clean up image
         run: docker rmi nemoci.azurecr.io/bionemo:${{ github.run_id }}
-
 # TODO: exclude tests from base image; run tests from github workspace mounted in the image.
 # TODO: figure out way of cleaning up working directory (requires sudo or for us to fix file ownership from release container)