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Update from ferret/trunk (issue #1868, issue #1882, add .agg to error…
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… message, 7.4.2); update bench/test_results

git-svn-id: file:///home/users/tmap/svn/repos/ferret/branches/pyferret@25345 fdbf22ae-c210-0410-be80-ca943da6b8f8
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@karlmsmith
karlmsmith committed Jul 10, 2018
1 parent 009b92d commit 70ab9d4
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Showing 43 changed files with 2,041 additions and 1,430 deletions.
2 changes: 2 additions & 0 deletions bench/TRASH_FILES
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Original file line number Diff line number Diff line change
Expand Up @@ -94,6 +94,8 @@ longtitle.nc
longvname.nc
lonlat.dat
lonlat.nc
monthA.nc
monthB.nc
myfile.nc
my_file_vars.nc
mypack.nc
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60 changes: 41 additions & 19 deletions bench/ansley_official.rhel6-64_err
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@@ -1,10 +1,10 @@
Procedure run_all to run all FERRET benchmarks
Running FERRET version /home/users/ansley/build/working/FERRET/fer/ferret_c
-rwxr-xr-x. 1 ansley tmap 113322570 Jul 9 15:20 /home/users/ansley/build/working/FERRET/fer/ferret_c
Using external functions from /home/users/ansley/build/working/FERRET/external_functions/ext_func/
-rwxr-xr-x. 1 ansley tmap 113322463 Jul 10 11:21 /home/users/ansley/build/working/FERRET/fer/ferret_c
Using external functions from /home/users/ansley/build/working/FERRET/external_functions/ext_func
Running the tests of external functions y
Benchmark run by ansley
Note: issue with PLOT/OVER/VS/SYM=dot
Note: restore handling trans of scalars. Issue 1882, appending timesteps and the bounds attrib
ncdump output will be in all_ncdump.out, and appended to this log file
***** Restricting Ferret paths to bench directory *****
FER_DATA=. ./data
Expand All @@ -13,16 +13,16 @@ FER_DAT=/home/users/tmap/ferret/rhel6-x86_64-linux
FER_DESCR=. ./data
FER_DIR=.
FER_DSETS=. ./data
FER_EXTERNAL_FUNCTIONS=/home/users/ansley/build/working/FERRET/external_functions/ext_func/
FER_EXTERNAL_FUNCTIONS=/home/users/ansley/build/working/FERRET/external_functions/ext_func
FER_FONTS=/home/users/tmap/ferret/rhel6-x86_64-linux/ppl/fonts
FER_GO=. ./v4jnls ./v5jnls ./v6jnls ./v7jnls ./genjnls . /home/users/tmap/ferret/rhel6-x86_64-linux/go /home/users/tmap/ferret/rhel6-x86_64-linux/examples /home/users/tmap/ferret/rhel6-x86_64-linux/contrib
FER_GO=. ./v4jnls ./v5jnls ./v6jnls ./v7jnls ./genjnls . ./v4jnls ./v5jnls ./v6jnls ./v7jnls ./genjnls . ./v4jnls ./v5jnls ./v6jnls ./v7jnls ./genjnls . /home/users/tmap/ferret/rhel6-x86_64-linux/go /home/users/tmap/ferret/rhel6-x86_64-linux/examples /home/users/tmap/ferret/rhel6-x86_64-linux/contrib
FER_GRIDS=. ./data
FER_LIBS=/home/users/tmap/ferret/rhel6-x86_64-linux/lib
FER_PALETTE=. /home/users/tmap/ferret/rhel6-x86_64-linux/ppl
FER_WEB_BROWSER=firefox
PWD=/home/users/ansley/build/working/FERRET/bench
PYFER_EXTERNAL_FUNCTIONS=/home/users/tmap/ferret/rhel6-x86_64-linux/ext_func/pylibs
Beginning at Mon Jul 9 15:39:03 PDT 2018
Beginning at Tue Jul 10 11:39:02 PDT 2018
PERMANENT data cleared from memory
TEMPORARY data cleared from memory
ooooooooooooooooooooooooooooooooooooooooooo
Expand Down Expand Up @@ -1342,6 +1342,8 @@ ooooooooooooooooooooooooooooooooooooooooooo
*** NOTE: Axis is in use by grid GHB1
*** NOTE: Not deleted: TIME2
*** NOTE: Axis is in use by grid GJR1
*** NOTE: Not deleted: TIME5
*** NOTE: Axis is in use by grid GQO1
*** NOTE: Not deleted: TIME6
*** NOTE: Axis is in use by grid GCQ1
*** NOTE: Not deleted: TAX
Expand Down Expand Up @@ -1404,7 +1406,7 @@ ooooooooooooooooooooooooooooooooooooooooooo
*** NOTE: Axis is in use by grid G5DAY
*** NOTE: Not deleted: PSYU
*** NOTE: Axis is in use by grid G5DAY
*** NOTE: Not deleted: TIME5
*** NOTE: Not deleted: TIME7
*** NOTE: Axis is in use by grid GXYT
*** NOTE: Not deleted: TEST_IRREG
*** NOTE: Axis is in use by grid (G015)
Expand Down Expand Up @@ -1474,6 +1476,8 @@ ooooooooooooooooooooooooooooooooooooooooooo
*** NOTE: Axis is in use by grid GHB1
*** NOTE: Not deleted: TIME2
*** NOTE: Axis is in use by grid GJR1
*** NOTE: Not deleted: TIME5
*** NOTE: Axis is in use by grid GQO1
*** NOTE: Not deleted: TIME6
*** NOTE: Axis is in use by grid GCQ1
*** NOTE: Not deleted: TAX
Expand Down Expand Up @@ -1536,7 +1540,7 @@ ooooooooooooooooooooooooooooooooooooooooooo
*** NOTE: Axis is in use by grid G5DAY
*** NOTE: Not deleted: PSYU
*** NOTE: Axis is in use by grid G5DAY
*** NOTE: Not deleted: TIME5
*** NOTE: Not deleted: TIME7
*** NOTE: Axis is in use by grid GXYT
*** NOTE: Not deleted: PSZW
*** NOTE: Axis is in use by grid G5_10
Expand Down Expand Up @@ -2199,10 +2203,10 @@ Starting test: bn_labwid.jnl
TEMPORARY data cleared from memory
ooooooooooooooooooooooooooooooooooooooooooo
Starting test: bn_redefine_taxis_mc.jnl
Replacing definition of axis TIME10
Replacing definition of axis TIME12
*** NOTE: grid GHB2 used by data set coads_clim
*** NOTE: Redefinition may alter apparent contents of data set
Replacing definition of axis TIME10
Replacing definition of axis TIME12
*** NOTE: grid GHB2 used by data set coads_clim
*** NOTE: Redefinition may alter apparent contents of data set
PERMANENT data cleared from memory
Expand Down Expand Up @@ -2425,7 +2429,7 @@ ooooooooooooooooooooooooooooooooooooooooooo
*** NOTE: Changing the value of attribute (PSZT1).positive
*** NOTE: Changing the type of attribute (coadsx).modulo
*** NOTE: Changing the value of attribute (coadsx).modulo
*** NOTE: Changing the value of attribute (TIME5).time_origin
*** NOTE: Changing the value of attribute (TIME7).time_origin
**ERROR: command syntax: enclose coordinate variable name in parentheses
list coadsx.units
**ERROR: variable unknown or not in data set: COADSX.UNITS
Expand Down Expand Up @@ -2725,7 +2729,7 @@ ooooooooooooooooooooooooooooooooooooooooooo
TEMPORARY data cleared from memory
ooooooooooooooooooooooooooooooooooooooooooo
*** NOTE: /UNIT=MONTHS is ambiguous ... using 1/12 of 365.2425 days
Replacing definition of axis TIME14
Replacing definition of axis TIME16
*** NOTE: grid GSQ1 used by data set coads_climatology
*** NOTE: Redefinition may alter apparent contents of data set
PERMANENT data cleared from memory
Expand Down Expand Up @@ -3440,9 +3444,6 @@ ooooooooooooooooooooooooooooooooooooooooooo
LISTing to file t_bug.nc
Replacing definition of axis T_AXIS
LISTing to file t_bug.nc
NetCDF: Variable not found (OPeNDAP/netCDF Error code -49)
T_AXIS_bnds not found. Attempt to append irregular coordinates to NetCDF axis which has no bounds attribute. Write data originally with the /BOUNDS qualifier.
LIST/FORMAT=CDF/FILE=t_bug.nc/APPEND var
PERMANENT data cleared from memory
TEMPORARY data cleared from memory
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Expand Down Expand Up @@ -3517,7 +3518,7 @@ ooooooooooooooooooooooooooooooooooooooooooo
*** NOTE: LON1_15: Writing scaled coordinates not implemented. Suggest using nco operators on output file to pack coord values
*** NOTE: LAT1800_1800: Writing scaled coordinates not implemented. Suggest using nco operators on output file to pack coord values
*** NOTE: ENS: Writing scaled coordinates not implemented. Suggest using nco operators on output file to pack coord values
*** NOTE: TIME20: Writing scaled coordinates not implemented. Suggest using nco operators on output file to pack coord values
*** NOTE: TIME21: Writing scaled coordinates not implemented. Suggest using nco operators on output file to pack coord values
*** NOTE: Units on axis "ENS" are not recognized: count
*** NOTE: They will not be convertible:
PERMANENT data cleared from memory
Expand Down Expand Up @@ -4488,10 +4489,10 @@ ooooooooooooooooooooooooooooooooooooooooooo
nosuchfile.nc
SET DAT/FORM=CDF nosuchfile.nc
**TMAP ERR: non-existent or not on line
Searched $FER_DESCR and $FER_DATA for nosuchfile(.nc ,.cdf,.des)
Searched $FER_DESCR and $FER_DATA for nosuchfile(.nc ,.cdf,.des,.agg)
SET DAT/FORM=CDF nosuchfile
**TMAP ERR: non-existent or not on line
Searched $FER_DESCR and $FER_DATA for snoopy(.nc ,.cdf,.des)
Searched $FER_DESCR and $FER_DATA for snoopy(.nc ,.cdf,.des,.agg)
SET DAT/FORM=CDF snoopy
**netCDF error
NetCDF: Unknown file format (OPeNDAP/netCDF Error code -51)
Expand Down Expand Up @@ -6681,6 +6682,10 @@ list a[x=@evn:3]
list a[x=@std]
**ERROR: illegal use of transformation: A[X=???@WGT,D=0] applied to point
list a[x=@wgt]
**ERROR: illegal use of transformation: A[X=???@SBX:3,D=0] applied to point
list a[x=@sbx]
**ERROR: illegal use of transformation: A[X=???@FAV:3,D=0] applied to point
list a[x=@fav]
PERMANENT data cleared from memory
TEMPORARY data cleared from memory
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Expand All @@ -6702,6 +6707,23 @@ Replacing definition of axis xaxis
Replacing definition of axis yaxis
PERMANENT data cleared from memory
TEMPORARY data cleared from memory
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*** NOTE: True monthly axis has an implicit /EDGES qualifier
LISTing to file a.nc
LISTing to file monthA.nc
LISTing to file monthB.nc
*** NOTE: Not deleted: MONTHAX
*** NOTE: Axis is in use by grid GSI1
LISTing to file monthA.nc
LISTing to file monthA.nc
*** NOTE: Appending to NetCDF record axis which has no bounds attribute.
*** NOTE: This will result in incorrect box sizes on record axis: monthax
*** NOTE: Write the data initially with the /BOUNDS qualifier
NetCDF: Variable not found (OPeNDAP/netCDF Error code -49)
monthax_bnds not found. Attempt to append to NetCDF axis having no bounds attribute. Use /NOBOUNDS or rewrite original data with bounds.
LIST/FORMAT=CDF/append/file=monthA.nc/t=1-dec-2018:31-dec-2018/bounds tvar
PERMANENT data cleared from memory
TEMPORARY data cleared from memory
ooooooooooooooooooooooooooooooooooooooooooo
Starting test: bn_use_agg
*** NOTE: Variable "AIRT" excluded from aggregate: Not found in all member datasets
Expand Down Expand Up @@ -6861,4 +6883,4 @@ vector/i=1:10/j=1:20/nolabel i/j,j/i,i+j
Re-defining viewport LM6
Re-defining viewport UM6
*** NOTE: Cannot create new windows when batch mode set
Ended at Mon Jul 9 15:47:43 PDT 2018
Ended at Tue Jul 10 11:48:10 PDT 2018
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