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Mixed precision: monin_obukhov unit tests #1272

Merged
merged 111 commits into from
Jul 28, 2023
Merged

Mixed precision: monin_obukhov unit tests #1272

merged 111 commits into from
Jul 28, 2023

Commits on Jan 20, 2023

  1. Merge mixedmode

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  2. Remove subroutines/functions from incorrect files

    @mcallic2
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  3. Add platform_mod

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  4. Changes interface precision

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  5. Adds public interfaces

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  6. Adds #include statements

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  7. Adds header files

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  8. Adds new files

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Commits on Jan 23, 2023

  1. Adds double precision

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  2. Change routine/function name to macros

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  3. Adds mixed precision

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Commits on Jan 24, 2023

  1. Adds dimension size changing loop

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  2. Merge branch 'NOAA-GFDL:main' into monin_obukhov

    @mcallic2
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  3. Changes interface call naming

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Commits on Jan 25, 2023

  1. Removes unnecessary precision

    @mcallic2
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  2. Fixes module variable precision

    @mcallic2
    mcallic2 committed Jan 25, 2023
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  3. Merge branch 'main' of github.com:mcallic2/FMS into monin_obukhov

    @mcallic2
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  4. Merge branch 'monin_obukhov' of github.com:mcallic2/FMS into monin_ob… 

    …ukhov
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  5. Removes trailing whitespace

    @mcallic2
    mcallic2 committed Jan 25, 2023
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  6. Fixes long lines

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  7. Fixes more long lines

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  8. Changes for cmake

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Commits on Feb 1, 2023

  1. fix: misspellings and rename variable in yaml_parser.F90 (NOAA-GFDL#1127 

    )
    @J-Lentz
    J-Lentz authored Feb 1, 2023
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  2. fix: module and local variable name conflicts in time_interp (NOAA-GF… 

    …DL#1125)

Co-authored-by: mlee03 <[email protected]>
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  3. docs: Correct instructions to build without MPI (NOAA-GFDL#1128)

    @J-Lentz
    J-Lentz authored Feb 1, 2023
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Commits on Feb 8, 2023

  1. Merge mixedmode updated

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Commits on Feb 9, 2023

  1. fix: pointer to allocatable in amip_interp_type (NOAA-GFDL#1106)

    @ganganoaa
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Commits on Feb 14, 2023

  1. feat: log_diag_field_info updates from diag rewrite (NOAA-GFDL#1117)

    @rem1776
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Commits on Feb 16, 2023

  1. fix: remove implied save for valid_types variables in sat_vapor_pres_k ( 

    NOAA-GFDL#1120)
    @uramirez8707
    uramirez8707 authored Feb 16, 2023
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  2. revert: log_diag_field_info argument changes (NOAA-GFDL#1136) 

    Co-authored-by: rem1776 <[email protected]>
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Commits on Feb 23, 2023

  1. Changes for expoential value precsion

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  2. feat: refactored send_data math (field buffer update) functions. (NOA… 

    …A-GFDL#1131)
    @ngs333
    ngs333 authored Feb 23, 2023
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Commits on Feb 24, 2023

  1. Change character line length

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  2. Fixes missed exponentials and comments

    @mcallic2
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  3. Missed real values

    @mcallic2
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  4. Changes implicit casting to explicit casting

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Commits on Feb 27, 2023

  1. fix: adds tags to nested do loops in fms_diag_fieldbuff.fh to fix his… 

    …tory file issues (NOAA-GFDL#1139)
    @ngs333
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Commits on Mar 9, 2023

  1. fix - gnu and pgi issue with class(*) in send_data3d (NOAA-GFDL#1149)

    @nikizadehgfdl
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  2. feat: extend string interface in fms_string_utils_mod (NOAA-GFDL#… 

    …1142)
    @J-Lentz
    J-Lentz authored Mar 9, 2023
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  3. fix: add omp directives for race condition in tridiagonal (NOAA-GFDL#… 

    …1109)
    @ganganoaa
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Commits on Mar 13, 2023

  1. fix: missing if statement in PR NOAA-GFDL#1149 (NOAA-GFDL#1155)

    @nikizadehgfdl
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Commits on Mar 28, 2023

  1. fix: time_manager missing changes from year to yr, month to mo, day t… 

    …o dy (NOAA-GFDL#1169)
    @mlee03
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Commits on Apr 3, 2023

  1. chore: update changelog and version numbers for release (NOAA-GFDL#1167)

    @rem1776
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Commits on Apr 6, 2023

  1. chore: append dev to version number post-release (NOAA-GFDL#1179)

    @github-actions
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Commits on Jun 4, 2023

  1. merge mixedmode

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  2. Removes unecessary path

    @mcallic2
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  3. Removes repeated lines from .F90 file

    @mcallic2
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  4. Removes repeated lines from .F90 file

    @mcallic2
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  5. Removes old include files

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Commits on Jun 16, 2023

  1. feat: merge 2023.01.01 changes into main (NOAA-GFDL#1259) 

    * fix: fms2 io performance update for domain_reads (NOAA-GFDL#1226)

* fix: fms2 io performance update for compressed writes (NOAA-GFDL#1227)

* chore: build/log updates for patch (NOAA-GFDL#1247)

Co-authored-by: uramirez8707 <[email protected]>
Co-authored-by: rem1776 <[email protected]>
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    3 people authored Jun 16, 2023
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  2. feat: mixed precision for axis_utils2, horiz_interp, sat_vapor_pressu… 

    …re, and fms_mod (NOAA-GFDL#1239) (NOAA-GFDL#1258)

* feat: mixed precision axis_utils2 (NOAA-GFDL#1104)

* feat: mixed precision fms_mod (NOAA-GFDL#1147)

* feat: horiz interp mixed precision (NOAA-GFDL#1067)

* mixed precision sat_vapor_pressure  (NOAA-GFDL#1095)

* feat: add mixed precision axis_utils unit tests (NOAA-GFDL#1172)

* fix: move type definitions to before first usage to fix nvhpc bug (NOAA-GFDL#1187)

* fix: change allocatable type for intel errors (NOAA-GFDL#1221)

Co-authored-by: Caitlyn McAllister <[email protected]>
Co-authored-by: Jesse Lentz <[email protected]>
Co-authored-by: MiKyung Lee <[email protected]>
    @rem1776 @mcallic2
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  3. fix: replace current_peset_num with 'n' which should be the active pe… 

    …list. (NOAA-GFDL#1246)
    @dkokron
    dkokron authored Jun 16, 2023
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  4. fix: gcc class(*) bug workaround for character arrays (NOAA-GFDL#1163)

    @laurenchilutti
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  5. fix: improve error messages in fms2_io (NOAA-GFDL#1183)

    @uramirez8707
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  6. feat: fms2_io unpack data (NOAA-GFDL#1231)

    @uramirez8707
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Commits on Jun 20, 2023

  1. fix: improve doxygen comment for tranlon (NOAA-GFDL#1257)

    @J-Lentz
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  2. fix: ifort 2022.3.0 & greater ICE bug in alltoall test + missing inpu… 

    …t nmls in mpp scripts (NOAA-GFDL#1158)
    @rem1776
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  3. fix: checks placed before allocating pointers passed into routines (N… 

    …OAA-GFDL#1152)
    @ganganoaa
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Commits on Jun 22, 2023

  1. Call monin_obukhov_stable_mix from stable_mix_1d 

    Restructure the subroutines in the `stable_mix` interface of
`monin_obukhov_mod` so that `stable_mix_1d` calls `monin_obukhov_stable_mix`,
which is the underlying implementation. `stable_mix_2d` and `stable_mix_3d`
now call `stable_mix_1d` on 1D slices of the data.
    Jesse Lentz committed Jun 22, 2023
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Commits on Jun 27, 2023

  1. fix: continuation line syntax for fms2_io error messages (NOAA-GFDL#1265 

    )
    @J-Lentz
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Commits on Jun 29, 2023

  1. fix: update doc site deployment action(NOAA-GFDL#1078)

    @rem1776
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  2. fix: warnings in test_mpp_nesting.F90 (NOAA-GFDL#1118)

    @rem1776
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Commits on Jun 30, 2023

  1. chore!: deprecate fms/mpp_io with use_deprecated_io macro (NOAA-GFDL#… 

    …1064)

BREAKING CHANGE: This commit removes mpp_io_mod and fms_io_mod, along with other routines that use the modules, from default compilation. The -Duse_deprecated_io CPP flag or --enable-deprecated-io configure time flag can be used to enable their compilation.
    @mcallic2
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  2. fix: field exists check for io update (NOAA-GFDL#1193)

    @J-Lentz
    J-Lentz authored Jun 30, 2023
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  3. fix: diag_fieldbuff_update module dependency in Makefile.am (NOAA-GFD… 

    …L#1266)
    @ngs333
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  4. chore: add deprecated io options to build systems and CI (NOAA-GFDL#1063 

    )
    @rem1776
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Commits on Jul 5, 2023

  1. New unit tests for monin_obukhov_mod

    Jesse Lentz committed Jul 5, 2023
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  2. Add reference answers for Intel on AMD box

    Jesse Lentz committed Jul 5, 2023
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  3. Add r4 answers for GNU

    Jesse Lentz committed Jul 5, 2023
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  4. Split array constructor lines to be <120 characters

    Jesse Lentz committed Jul 5, 2023
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  5. Name OUT.r4.nml and OUT.r8.nml properly 

    Properly name OUT.r4.nml and OUT.r8.nml at the time when they're created, rather
than renaming them later in the shell script.
    Jesse Lentz committed Jul 5, 2023
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  6. Remove whitespace from input.r4.nml

    Jesse Lentz committed Jul 5, 2023
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  7. Use absolute paths when copying nml files

    Jesse Lentz committed Jul 5, 2023
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  8. Include input.r4.nml and input.r4.nml in distribution

    Jesse Lentz committed Jul 5, 2023
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  9. fix: test errors from io flag (NOAA-GFDL#1271)

    @rem1776
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  10. Add 2D and 3D test cases

    Jesse Lentz committed Jul 5, 2023
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  11. Use relative paths to nml files

    Jesse Lentz committed Jul 5, 2023
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Commits on Jul 6, 2023

  1. Fix segmentation fault in MO_DRAG_1D_ 

    Fix a segmentation fault that occurs when `MO_DRAG_1D_` is called without its
optional `avail` argument.
    Jesse Lentz committed Jul 6, 2023
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  2. Merge branch 'monin_obukhov' into monin_obukhov_tests

    Jesse Lentz committed Jul 6, 2023
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  3. Use absolute paths when copying nml files

    Jesse Lentz committed Jul 6, 2023
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  4. changes format of exponential numbers

    @mcallic2
    mcallic2 committed Jul 6, 2023
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  5. Add comments to monin_obukhov unit tests

    Jesse Lentz committed Jul 6, 2023
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Commits on Jul 10, 2023

  1. Use spread() intrinsic 

    Use Fortran's `spread()` intrinsic to promote 1D arrays to 2D and 3D.
    Jesse Lentz committed Jul 10, 2023
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Commits on Jul 11, 2023

  1. CI: update oneapi container version (NOAA-GFDL#1277)

    @rem1776
    rem1776 authored Jul 11, 2023
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  2. Use correct kind parameters 

    Use real(r4_kind) and real(r8_kind), rather than real(i4_kind) and real(i8_kind).
    Jesse Lentz committed Jul 11, 2023
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Commits on Jul 13, 2023

  1. refactor: monin_obukhov_stable_mix calls from stable_mix_1d (NOAA… 

    …-GFDL#1268)
    @J-Lentz
    J-Lentz authored Jul 13, 2023
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  2. fix: out-of-bounds memory access in axis_utils2 (NOAA-GFDL#1157)

    @J-Lentz
    J-Lentz authored Jul 13, 2023
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  3. fix: maximize system stacksize limit in fms_init (NOAA-GFDL#1233)

    @J-Lentz
    J-Lentz authored Jul 13, 2023
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  4. test: remove stack limit checks in test scripts (NOAA-GFDL#1280)

    @rem1776
    rem1776 authored Jul 13, 2023
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  5. fix: mpp global arrays test fixes (NOAA-GFDL#1174)

    @rem1776
    rem1776 authored Jul 13, 2023
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  6. feat: update mpp_do_update_ad.fh to resolve JEDI requirement (NOAA-GF… 

    …DL#1225)
    @jkbk2004
    jkbk2004 authored Jul 13, 2023
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  7. chore: add prefixed aliases for libfms routines (NOAA-GFDL#1262) 

    BREAKING CHANGE: Any code using the global fms module (libFMS.F90) will break as this adds prefixes to all names in that module.
    @rem1776
    rem1776 authored Jul 13, 2023
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Commits on Jul 19, 2023

  1. exponentials with kind parameter

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    mcallic2 committed Jul 19, 2023
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  2. missed exponential

    @mcallic2
    mcallic2 committed Jul 19, 2023
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  3. split mo_integral interface into two, also missed a comma from last c… 

    …ommit
    @mcallic2
    mcallic2 committed Jul 19, 2023
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  4. Test all variants of mo_diff 

    Test all six variants of the mo_diff interface. Store input values and answers
as scalars rather than arrays.
    Jesse Lentz committed Jul 19, 2023
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  5. Merge remote-tracking branch 'mcallic2/monin_obukhov' into monin_obuk… 

    …hov_tests
    Jesse Lentz committed Jul 19, 2023
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Commits on Jul 26, 2023

  1. Use parameter attribute for input arrays 

    Declare input arrays with the `parameter` attribute, and set their values via
derived type constructors.
    Jesse Lentz committed Jul 26, 2023
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  2. Use associate alias rather than full name

    Jesse Lentz committed Jul 26, 2023
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  3. Skip monin_obukhov tests to avoid CI failure

    Jesse Lentz committed Jul 26, 2023
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Commits on Jul 27, 2023

  1. merge mixedmode

    @mcallic2
    mcallic2 committed Jul 27, 2023
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  2. merge main

    @mcallic2
    mcallic2 committed Jul 27, 2023
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  3. merge conflicts can be hard

    @mcallic2
    mcallic2 committed Jul 27, 2023
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  4. removes unnessary precision

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    mcallic2 committed Jul 27, 2023
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Commits on Jul 28, 2023

  1. Merge branch 'mixedmode' into monin_obukhov

    @mcallic2
    mcallic2 authored Jul 28, 2023
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  2. merge mixedmode

    @mcallic2
    mcallic2 committed Jul 28, 2023
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  3. git confusion

    @mcallic2
    mcallic2 committed Jul 28, 2023
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  4. merge confict

    @mcallic2
    mcallic2 committed Jul 28, 2023
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  5. put these back

    @mcallic2
    mcallic2 committed Jul 28, 2023
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  6. because jesse told me too

    @mcallic2
    mcallic2 committed Jul 28, 2023
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  7. Merge remote-tracking branch 'mcallic2/monin_obukhov' into monin_obuk… 

    …hov_tests
    Jesse Lentz committed Jul 28, 2023
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