Adds function recondition_indices to diag_util_mod #2193

Job	Run time
build (--disable-openmp, --with-yaml, --enable-deprecated-io)	11m 51s
build (--disable-openmp, --with-yaml, --disable-deprecated-io)	10m 4s
build (--disable-openmp, --enable-test-input=/home/unit_tests_input, --enable-deprecated-io)	11m 43s
build (--disable-openmp, --enable-test-input=/home/unit_tests_input, --disable-deprecated-io)	10m 14s
build (--enable-mixed-mode, --with-yaml, --enable-deprecated-io)	13m 27s
build (--enable-mixed-mode, --with-yaml, --disable-deprecated-io)	10m 16s
build (--enable-mixed-mode, --enable-test-input=/home/unit_tests_input, --enable-deprecated-io)	10m 59s
build (--enable-mixed-mode, --enable-test-input=/home/unit_tests_input, --disable-deprecated-io)	10m 40s
build (--disable-setting-flags, --with-yaml, --enable-deprecated-io)	10m 32s
build (--disable-setting-flags, --with-yaml, --disable-deprecated-io)	11m 42s
build (--disable-setting-flags, --enable-test-input=/home/unit_tests_input, --enable-deprecated-io)	10m 49s
build (--disable-setting-flags, --enable-test-input=/home/unit_tests_input, --disable-deprecated-io)	10m 44s
build (--with-mpi=no, --with-yaml, --enable-deprecated-io)	4m 25s
build (--with-mpi=no, --with-yaml, --disable-deprecated-io)	4m 8s
build (--with-mpi=no, --enable-test-input=/home/unit_tests_input, --enable-deprecated-io)	5m 21s
build (--with-mpi=no, --enable-test-input=/home/unit_tests_input, --disable-deprecated-io)	4m 4s
	2h 30m 59s

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