BUG: final atlas filename issue #2 => resolved by copying FinalAtlasD…

…TI_average.nrrd to FinalAtlasDTI.nrrd at the end of final resampling

Scripts/template_atlasbuilding.py

@@ -620,6 +620,7 @@ def CheckFileExists ( File, case, caseID ) : # returns 1 if file exists or has b
       IterDir="Loop_"+str(cnt)+"/"
       PrevIterDir="Loop_"+str(cnt-1)+"/"
       DTIAverage2 = FinalResampPath + "/Second_Resampling/" + IterDir+ "/FinalAtlasDTI_averaged.nrrd"
+      DTITemp = FinalResampPath + "/Second_Resampling/" + IterDir+ "/FinalAtlasDTI.nrrd"
       AverageCommand2 = m_SoftPath[6]+" "  #dtiaverage
 
       if cnt==0:
@@ -763,7 +764,7 @@ def CheckFileExists ( File, case, caseID ) : # returns 1 if file exists or has b
     print("\n=> Moving final images to final folders")
     case = 0
     LastIterDir="Loop_"+str(m_nbLoopsDTIReg-1)+"/"
-
+    shutil.copy(DTIAverage2,DTITemp)
     while case < len(allcases):
       if SecondResampRecomputed[case] :
         GlobalDefField2 = FinalResampPath + "/Second_Resampling/" + LastIterDir + allcasesIDs[case] + "_GlobalDisplacementField.nrrd"