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@NIGMS

National Institute of General Medical Sciences

Increasing our understanding of biological processes and lays the foundation for advances in disease diagnosis, treatment, and prevention.

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  1. NIGMS-Sandbox NIGMS-Sandbox Public

    Collection of cloud-based biomedical data science learning modules funded by the National Institute of General Medical Sciences at the NIH

    Shell 56 13

  2. DNA-Methylation-Sequencing-Analysis-with-WGBS DNA-Methylation-Sequencing-Analysis-with-WGBS Public

    Jupyter Notebook 9 2

  3. Introduction-to-Data-Science-for-Biology Introduction-to-Data-Science-for-Biology Public

    Python-based machine learning and data science module from SFSU developed for the NIGMS Sandbox project

    Jupyter Notebook 6 5

  4. ATAC-Seq-and-Single-Cell-ATAC-Seq-Analysis ATAC-Seq-and-Single-Cell-ATAC-Seq-Analysis Public

    ATAC-seq and scATAC-seq module developed by the University of Nebraska Medical Center

    Jupyter Notebook 6 4

  5. Fundamentals-of-Bioinformatics Fundamentals-of-Bioinformatics Public

    Introduction to bioinformatics command line tools on the cloud, developed by Dartmouth College

    HTML 6 3

  6. Metagenomics-Analysis-of-Biofilm-Microbiome Metagenomics-Analysis-of-Biofilm-Microbiome Public

    Jupyter Notebook 5 3

Repositories

Showing 10 of 22 repositories
  • NIGMS-Sandbox Public

    Collection of cloud-based biomedical data science learning modules funded by the National Institute of General Medical Sciences at the NIH

    NIGMS/NIGMS-Sandbox’s past year of commit activity
    Shell 56 13 0 1 Updated Dec 26, 2024
  • Consensus-Pathway-Analysis-in-the-Cloud Public

    Consensus pathway analysis module developed by the University of Nevada at Reno

    NIGMS/Consensus-Pathway-Analysis-in-the-Cloud’s past year of commit activity
    HTML 1 2 0 0 Updated Dec 26, 2024
  • RNA-Seq-Differential-Expression-Analysis Public

    RNAseq workflow run using Snakemake on Google Cloud Platform, developed as part of the NIH NIGMS Sandbox

    NIGMS/RNA-Seq-Differential-Expression-Analysis’s past year of commit activity
    Jupyter Notebook 2 MIT 1 0 0 Updated Dec 24, 2024
  • Biomedical-Imaging-Analysis-using-AI-ML-Approaches Public

    Machine Learning module for cloud-based analyses developed as part of the NIGMS Sandbox Project

    NIGMS/Biomedical-Imaging-Analysis-using-AI-ML-Approaches’s past year of commit activity
    Jupyter Notebook 4 3 0 0 Updated Dec 16, 2024
  • Proteome-Quantification Public

    Secondary analysis of Proteomics data in R, developed by the University of Arkansas for Medical Sciences for the NIH NIGMS Sandbox project.

    NIGMS/Proteome-Quantification’s past year of commit activity
    Jupyter Notebook 0 4 0 0 Updated Dec 2, 2024
  • Fundamentals-of-Bioinformatics Public

    Introduction to bioinformatics command line tools on the cloud, developed by Dartmouth College

    NIGMS/Fundamentals-of-Bioinformatics’s past year of commit activity
    HTML 6 3 0 0 Updated Nov 21, 2024
  • NIGMS/DNA-Methylation-Sequencing-Analysis-with-WGBS’s past year of commit activity
    Jupyter Notebook 9 2 0 0 Updated Nov 21, 2024
  • Analysis-of-Biomedical-Data-for-Biomarker-Discovery Public

    R-based module that uses machine learning in biomarker discovery

    NIGMS/Analysis-of-Biomedical-Data-for-Biomarker-Discovery’s past year of commit activity
    HTML 0 4 0 0 Updated Nov 21, 2024
  • NIGMS/Metagenomics-Analysis-of-Biofilm-Microbiome’s past year of commit activity
    Jupyter Notebook 5 GPL-3.0 3 0 0 Updated Nov 21, 2024
  • Integrating-Multi-Omics-Datasets Public

    Multi-omics module that includes RNAseq, Epigenetics, and integrated multi-omics analyses developed as part of the NIGMS Sandbox project

    NIGMS/Integrating-Multi-Omics-Datasets’s past year of commit activity
    Jupyter Notebook 3 1 0 0 Updated Nov 21, 2024

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