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implement hardening scheme, frost mortality impacts and hydraulic imp…
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@mariuslam
mariuslam committed Oct 10, 2022
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8 changes: 8 additions & 0 deletions biogeochem/EDCohortDynamicsMod.F90
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Original file line number Diff line number Diff line change
Expand Up @@ -672,6 +672,8 @@ subroutine zero_cohort(cc_p)
currentcohort%cambial_mort = 0._r8
currentCohort%c13disc_clm = 0._r8
currentCohort%c13disc_acc = 0._r8
currentCohort%hard_level = -2._r8
currentCohort%hard_level_prev = -2._r8

! Daily nutrient fluxes are INTEGRATED over the course of the
! day. This variable MUST be zerod upon creation AND
Expand Down Expand Up @@ -1381,6 +1383,10 @@ subroutine fuse_cohorts(currentSite, currentPatch, bc_in)
! their initization values, which should be the same for each

if ( .not.currentCohort%isnew) then
currentCohort%hard_level = (currentCohort%n*currentCohort%hard_level + &
nextc%n*nextc%hard_level)/newn
currentCohort%hard_level_prev = (currentCohort%n*currentCohort%hard_level_prev + &
nextc%n*nextc%hard_level_prev)/newn
currentCohort%seed_prod = (currentCohort%n*currentCohort%seed_prod + &
nextc%n*nextc%seed_prod)/newn
currentCohort%gpp_acc = (currentCohort%n*currentCohort%gpp_acc + &
Expand Down Expand Up @@ -1868,6 +1874,8 @@ subroutine copy_cohort( currentCohort,copyc )
n%smort = o%smort
n%asmort = o%asmort
n%frmort = o%frmort
n%hard_level = o%hard_level
n%hard_level_prev = o%hard_level_prev

! logging mortalities, Yi Xu
n%lmort_direct =o%lmort_direct
Expand Down
159 changes: 149 additions & 10 deletions biogeochem/EDMortalityFunctionsMod.F90
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Original file line number Diff line number Diff line change
Expand Up @@ -12,13 +12,20 @@ module EDMortalityFunctionsMod
use EDTypesMod , only : ed_cohort_type
use EDTypesMod , only : ed_site_type
use EDTypesMod , only : ed_patch_type
use EDTypesMod , only : leaves_on
use FatesConstantsMod , only : itrue,ifalse
use FatesAllometryMod , only : bleaf
use FatesAllometryMod , only : storage_fraction_of_target
use FatesInterfaceTypesMod , only : bc_in_type
use FatesInterfaceTypesMod , only : hlm_use_ed_prescribed_phys
use FatesInterfaceTypesMod , only : hlm_freq_day
use FatesInterfaceTypesMod , only : hlm_use_planthydro
use FatesInterfaceTypesMod , only : hlm_model_day
use FatesInterfaceTypesMod , only : hlm_use_frosthard
use FatesInterfaceTypesMod , only : hlm_current_year
use FatesInterfaceTypesMod , only : hlm_current_month
use FatesInterfaceTypesMod , only : hlm_current_day
use PRTParametersMod , only : prt_params
use EDLoggingMortalityMod , only : LoggingMortality_frac
use EDParamsMod , only : fates_mortality_disturbance_fraction

Expand All @@ -37,6 +44,7 @@ module EDMortalityFunctionsMod
public :: mortality_rates
public :: Mortality_Derivative
public :: ExemptTreefallDist
public :: Hardening_scheme


! ============================================================================
Expand All @@ -49,7 +57,7 @@ module EDMortalityFunctionsMod



subroutine mortality_rates( cohort_in,bc_in,cmort,hmort,bmort,frmort,smort,asmort )
subroutine mortality_rates( currentSite,cohort_in,bc_in,cmort,hmort,bmort,frmort,smort,asmort )

! ============================================================================
! Calculate mortality rates from carbon storage, hydraulic cavitation,
Expand All @@ -61,6 +69,7 @@ subroutine mortality_rates( cohort_in,bc_in,cmort,hmort,bmort,frmort,smort,asmor
use FatesConstantsMod, only : fates_check_param_set

type (ed_cohort_type), intent(in) :: cohort_in
type (ed_site_type), intent(inout), target :: currentSite
type (bc_in_type), intent(in) :: bc_in
real(r8),intent(out) :: bmort ! background mortality : Fraction per year
real(r8),intent(out) :: cmort ! carbon starvation mortality
Expand All @@ -85,6 +94,10 @@ subroutine mortality_rates( cohort_in,bc_in,cmort,hmort,bmort,frmort,smort,asmor
real(r8) :: min_fmc_ar ! minimum fraction of maximum conductivity for absorbing root
real(r8) :: min_fmc ! minimum fraction of maximum conductivity for whole plant
real(r8) :: flc ! fractional loss of conductivity
real(r8) :: Tmin ! minimum daily average temperature
real(r8) :: hard_hydr ! reduced hydro mortality if hardened
real(r8) :: max_h !maximum hardiness level
real(r8), parameter :: min_h = -2.0_r8 !minimum hardiness level
real(r8), parameter :: frost_mort_buffer = 5.0_r8 ! 5deg buffer for freezing mortality
logical, parameter :: test_zero_mortality = .false. ! Developer test which
! may help to debug carbon imbalances
Expand Down Expand Up @@ -140,9 +153,14 @@ subroutine mortality_rates( cohort_in,bc_in,cmort,hmort,bmort,frmort,smort,asmor
min_fmc = min(min_fmc_ag, min_fmc_tr)
min_fmc = min(min_fmc, min_fmc_ar)
flc = 1.0_r8-min_fmc
if(flc >= hf_flc_threshold .and. hf_flc_threshold < 1.0_r8 )then
hmort = (flc-hf_flc_threshold)/(1.0_r8-hf_flc_threshold) * &
EDPftvarcon_inst%mort_scalar_hydrfailure(cohort_in%pft)
if(flc >= hf_flc_threshold .and. hf_flc_threshold < 1.0_r8 )then
if (hlm_use_hydrohard .eq. itrue .and. currentSite%hard_level2(cohort_in%pft) < -3._r8) then
max_h=min(max(EDPftvarcon_inst%freezetol(cohort_in%pft),max(currentSite%hardtemp,-60._r8)-10._r8),min_h)
hard_hydr=EDPftvarcon_inst%mort_scalar_hydrfailure(cohort_in%pft)*( ((currentSite%hard_level2(cohort_in%pft)-max_h)/(min_h-max_h) ) *0.5_r8+0.5_r8)
else
hard_hydr=EDPftvarcon_inst%mort_scalar_hydrfailure(cohort_in%pft)
end if
hmort = (flc-hf_flc_threshold)/(1.0_r8-hf_flc_threshold) * hard_hydr
else
hmort = 0.0_r8
endif
Expand Down Expand Up @@ -180,11 +198,20 @@ subroutine mortality_rates( cohort_in,bc_in,cmort,hmort,bmort,frmort,smort,asmor
! Eastern US carbon sink. Glob. Change Biol., 12, 2370-2390,
! doi: 10.1111/j.1365-2486.2006.01254.x

temp_in_C = cohort_in%patchptr%tveg24%GetMean() - tfrz

temp_dep_fraction = max(0.0_r8, min(1.0_r8, 1.0_r8 - (temp_in_C - &
EDPftvarcon_inst%freezetol(cohort_in%pft))/frost_mort_buffer) )
frmort = EDPftvarcon_inst%mort_scalar_coldstress(cohort_in%pft) * temp_dep_fraction
if (hlm_use_frosthard .eq. itrue) then !Hardiness level dependent frost mortality
Tmin=bc_in%tmin24_si-273.15_r8
temp_dep_fraction = max(0.0_r8, min(1.0_r8,(-Tmin + &
max(currentSite%hard_level2(cohort_in%pft),EDPftvarcon_inst%mort_scalar_coldstress(cohort_in%pft)))/frost_mort_buffer))
if (nint(hlm_model_day)<185) then
temp_dep_fraction=0._r8
endif
frmort = EDPftvarcon_inst%mort_scalar_coldstress(cohort_in%pft)*temp_dep_fraction
else
temp_in_C = bc_in%t_veg24_pa(ifp) - tfrz
temp_dep_fraction = max(0.0_r8, min(1.0_r8, 1.0_r8 - (temp_in_C - &
EDPftvarcon_inst%freezetol(cohort_in%pft))/frost_mort_buffer) )
frmort = EDPftvarcon_inst%mort_scalar_coldstress(cohort_in%pft) * temp_dep_fraction
endif


!mortality_rates = bmort + hmort + cmort
Expand Down Expand Up @@ -248,7 +275,7 @@ subroutine Mortality_Derivative( currentSite, currentCohort, bc_in, frac_site_pr

! Mortality for trees in the understorey.
!if trees are in the canopy, then their death is 'disturbance'. This probably needs a different terminology
call mortality_rates(currentCohort,bc_in,cmort,hmort,bmort,frmort,smort, asmort)
call mortality_rates(currentSite,currentCohort,bc_in,cmort,hmort,bmort,frmort,smort, asmort)
call LoggingMortality_frac(ipft, currentCohort%dbh, currentCohort%canopy_layer, &
currentCohort%lmort_direct, &
currentCohort%lmort_collateral, &
Expand Down Expand Up @@ -293,7 +320,119 @@ subroutine Mortality_Derivative( currentSite, currentCohort, bc_in, frac_site_pr
return

end subroutine Mortality_Derivative
! ============================================================================

subroutine Hardening_scheme(currentSite,currentPatch,cohort_in,bc_in )
!
! !DESCRIPTION:
! Hardening module from Rammig et al. 2010.
! Controls the unrealistic root water release by reducing root confuctivity, controls freezing mortality

! !ARGUMENTS
type (ed_site_type), intent(inout), target :: currentSite
type (ed_patch_type), intent(inout), target :: currentPatch
type (ed_cohort_type), intent(inout) :: cohort_in
type (bc_in_type), intent(in) :: bc_in


! !LOCAL VARIABLES:
real(r8) :: Tmean ! Daily average temperature °C
real(r8) :: Tmin ! Daily minimum temperature °C
real(r8) :: max_h ! Maximum hardiness level
real(r8) :: max_h_dehard ! Maximum hardiness level for dehardening function
real(r8), parameter :: min_h = -2.0_r8 ! Minimum hardiness level from Bigras for Picea abies (°C)
real(r8) :: target_h ! Target hardiness
real(r8) :: rate_h ! Hardening rate
real(r8) :: rate_dh ! Dehardening rate
real(r8) :: hard_level_prev ! Temporary variable for the previous time-step hardiness level
real(r8) :: dayl_thresh ! Threshold for the onset of the hardening only period
integer :: ipft ! pft index

Tmean=bc_in%temp24_si-273.15_r8
if (Tmean<-200.0_r8) then
Tmean=0.0_r8
endif
Tmin=bc_in%tmin24_si-273.15_r8

max_h=min(max(EDPftvarcon_inst%freezetol(cohort_in%pft),max(currentSite%hardtemp,-60._r8)-10._r8),min_h)

!Calculation of the target hardiness
if (Tmean <= max_h/1.5_r8) then !
target_h=max_h
else if (Tmean>= (6.0_r8-max_h/6._r8)) then
target_h=min_h
else
target_h = -sin((3.14159_r8*(0.5_r8+(Tmean-max_h/1.5_r8)/(-max_h/1.5_r8+(6.0_r8-max_h/6._r8)))))*(min_h-max_h)/2._r8-(min_h-max_h)/2._r8+min_h
end if
!Calculation of the hardening rate
if (Tmean <= max_h/2) then
rate_h=(max_h-min_h)/-31.11_r8+0.1_r8
else if (Tmean >= 20.0_r8) then
rate_h=0.1_r8
else
rate_h = sin((3.14159_r8*(0.5+(Tmean-max_h/2._r8)/(-max_h/2._r8+20._r8))))*((max_h-min_h)/-62.22_r8)+(((max_h-min_h)/-62.22_r8)+0.1_r8)
end if
!Calculation of the dehardening rate
if (max_h>-5.111_r8) then !this if steatement so that there is always possibility for 0.5 dehardening rate at 12 degreesC.
max_h_dehard=-5.111_r8
else
max_h_dehard=max_h
end if
ipft = cohort_in%pft
if (prt_params%season_decid(ipft) == itrue) then
if (Tmean <= 5.0_r8) then
rate_dh=0.0_r8
else if (Tmean >= 15.0_r8) then
rate_dh=5.0_r8*(max_h_dehard-min_h)/-31.11_r8
else
rate_dh=(Tmean-5.0_r8)*((max_h_dehard-min_h)/-62.22_r8)
end if
else
if (Tmean <= 2.5_r8) then
rate_dh=0.0_r8
else if (Tmean >= 12.5_r8) then
rate_dh=5.0_r8*(max_h_dehard-min_h)/-31.11_r8
else
rate_dh=(Tmean-2.5_r8)*((max_h_dehard-min_h)/-62.22_r8)
end if
end if

dayl_thresh= 42000.0_r8 + ( (-30.0_r8 - max(-60.0_r8,min(0.0_r8,currentSite%hardtemp)) )/15.0_r8) * 4500.0_r8
!Hardening calculation
cohort_in%hard_level_prev = cohort_in%hard_level

if (cohort_in%hard_level_prev + rate_dh > min_h) then
cohort_in%hard_level = min_h
else if (cohort_in%hard_level_prev >= target_h) then
cohort_in%hard_level = cohort_in%hard_level_prev - rate_h
else if (cohort_in%hard_level_prev < target_h) then
cohort_in%hard_level = cohort_in%hard_level_prev + rate_dh
end if
if (bc_in%dayl_si <= dayl_thresh .and. bc_in%dayl_si < bc_in%prev_dayl_si) then
if (cohort_in%hard_level_prev >= target_h) then
cohort_in%hard_level = cohort_in%hard_level_prev - rate_h
else
cohort_in%hard_level = cohort_in%hard_level_prev ! now dehardening is not possible in autumn but the hardiness level is also allowed to remain steady
end if
else if (bc_in%dayl_si > dayl_thresh .and. bc_in%dayl_si < bc_in%prev_dayl_si) then
cohort_in%hard_level = min_h
end if
ipft = cohort_in%pft
if (prt_params%season_decid(ipft) == itrue .and. cohort_in%status_coh == leaves_on .and. bc_in%dayl_si > bc_in%prev_dayl_si .and. &
(nint(hlm_model_day) >= currentSite%cleafondate .or. nint(hlm_model_day) >= currentSite%dleafondate)) then
cohort_in%hard_level = min_h
end if
if (cohort_in%hard_level > min_h) then
cohort_in%hard_level = min_h
end if
if (cohort_in%hard_level < max_h) then
cohort_in%hard_level = max_h
end if

return

end subroutine Hardening_scheme

! ============================================================================

function ExemptTreefallDist(ccohort) result(is_exempt)
Expand Down
2 changes: 1 addition & 1 deletion biogeochem/EDPatchDynamicsMod.F90
View file
Original file line number Diff line number Diff line change
Expand Up @@ -207,7 +207,7 @@ subroutine disturbance_rates( site_in, bc_in)
! Mortality for trees in the understorey.
currentCohort%patchptr => currentPatch

call mortality_rates(currentCohort,bc_in,cmort,hmort,bmort,frmort,smort,asmort)
call mortality_rates(site_in,currentCohort,bc_in,cmort,hmort,bmort,frmort,smort,asmort)
currentCohort%dmort = cmort+hmort+bmort+frmort+smort+asmort
call carea_allom(currentCohort%dbh,currentCohort%n,site_in%spread,currentCohort%pft, &
currentCohort%c_area)
Expand Down
46 changes: 41 additions & 5 deletions biogeophys/FatesHydroWTFMod.F90
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Original file line number Diff line number Diff line change
Expand Up @@ -72,6 +72,7 @@ module FatesHydroWTFMod
procedure :: dpsidth_from_th => dpsidth_from_th_base
procedure :: set_wrf_param => set_wrf_param_base
procedure :: get_thsat => get_thsat_base
procedure :: set_wrf_hard => set_wrf_hard_base

! All brands of WRFs have access to these tools to operate
! above and below sat and residual, should they want to
Expand Down Expand Up @@ -226,6 +227,7 @@ module FatesHydroWTFMod
procedure :: set_wrf_param => set_wrf_param_tfs
procedure :: get_thsat => get_thsat_tfs
procedure :: bisect_pv
procedure :: set_wrf_hard => set_wrf_cohort_hardening
end type wrf_type_tfs

! Water Conductivity Function
Expand Down Expand Up @@ -417,6 +419,14 @@ function dftcdpsi_from_psi_base(this,psi) result(dftcdpsi)
write(fates_log(),*) 'check how the class pointer was setup'
call endrun(msg=errMsg(sourcefile, __LINE__))
end function dftcdpsi_from_psi_base
subroutine set_wrf_hard_base(this,params_in)
class(wrf_type) :: this
real(r8),intent(in) :: params_in(:)
write(fates_log(),*) 'The base water retention function'
write(fates_log(),*) 'should never be actualized'
write(fates_log(),*) 'check how the class pointer was setup'
call endrun(msg=errMsg(sourcefile, __LINE__))
end subroutine set_wrf_hard_base

! =====================================================================================
! Van Genuchten Functions are defined here
Expand Down Expand Up @@ -747,10 +757,14 @@ function th_from_psi_cch(this,psi) result(th)
class(wrf_type_cch) :: this
real(r8), intent(in) :: psi
real(r8) :: th

real(r8) :: thmin
thmin=this%th_sat*(-20._r8/this%psi_sat)**(-1.0_r8/this%beta) !We want to avoid Soil water potentials below -25

if(psi>this%psi_max) then
! Linear range for extreme values
th = this%th_max + (psi-this%psi_max)/this%dpsidth_max
else if (psi<-20._r8) then
th = thmin + thmin/5._r8*(psi+20._r8)
else
th = this%th_sat*(psi/this%psi_sat)**(-1.0_r8/this%beta)
end if
Expand All @@ -764,9 +778,13 @@ function psi_from_th_cch(this,th) result(psi)
class(wrf_type_cch) :: this
real(r8),intent(in) :: th
real(r8) :: psi

real(r8) :: thmin
thmin=this%th_sat*(-20._r8/this%psi_sat)**(-1.0_r8/this%beta)

if(th>this%th_max) then
psi = this%psi_max + this%dpsidth_max*(th-max_sf_interp*this%th_sat)
else if (th < thmin) then
psi = -20._r8 - 5._r8 * (thmin-th)/thmin
else
psi = this%psi_sat*(th/this%th_sat)**(-this%beta)
end if
Expand All @@ -778,12 +796,16 @@ end function psi_from_th_cch
function dpsidth_from_th_cch(this,th) result(dpsidth)

class(wrf_type_cch) :: this
real(r8),intent(in) :: th
real(r8) :: dpsidth

real(r8),intent(in) :: th
real(r8) :: dpsidth
real(r8) :: thmin
thmin=this%th_sat*(-20._r8/this%psi_sat)**(-1.0_r8/this%beta)

! Differentiate:
if(th>this%th_max) then
dpsidth = this%dpsidth_max
else if (th < thmin ) then
dpsidth = 5._r8/thmin
else
dpsidth = -this%beta*this%psi_sat/this%th_sat * (th/this%th_sat)**(-this%beta-1._r8)
end if
Expand Down Expand Up @@ -1494,6 +1516,20 @@ subroutine set_wrf_param_tfs(this,params_in)
return
end subroutine set_wrf_param_tfs

! =====================================================================================
! Set the hardening changed variables in wrf
! PV curve changes if plants harden or deharden

subroutine set_wrf_cohort_hardening(this,params_in)

class(wrf_type_tfs) :: this
real(r8), intent(in) :: params_in(:)

this%pinot = params_in(1)
this%epsil = params_in(2)

return
end subroutine set_wrf_cohort_hardening
! =====================================================================================

function get_thsat_tfs(this) result(th_sat)
Expand Down
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