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GDC MVS into NCI-GDC #286

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Sync NCIP back to NCI-GDC fork

@samrichca samrichca force-pushed the develop branch 2 times, most recently from 9e37921 to 3cb1f1a Compare January 2, 2020 20:45
wteouchicago and others added 28 commits October 11, 2024 16:32
@wteouchicago
Merge pull request #418 from NCI-GDC/wendy_pauling_release_notes_firs…
9e3edc1 
…t_draft

first draft for pauling release notes
@wteouchicago
adds feature and 508 changes
69bbd70
@ebusygina
BUGs release notes
3c257c3
@wteouchicago
reorganization, adjusts wording, removes bugs which were never released
a87dcd2
@wteouchicago
minor adjustments, fixes
9a29d3b
@wteouchicago
capitalize cart, at least for the latest notes
7eeed51
@wteouchicago
fixes typos
2bf0573
@wteouchicago
addressing PR feedback
1c97bee
@wteouchicago
Merge pull request #419 from NCI-GDC/wendy_pauling_release_notes_2
ca09ecc 
Pauling release notes draft 2
@wteouchicago
adds SJ's release notes and a UC known issue, some reorganization
4d259de
@wteouchicago
fixes typo, minor language tweaks.
86fd58d
@wteouchicago
consistency fix
d399ea4
@wteouchicago @wwysoc2
removes redundant color scheme
63dbaeb 
Co-authored-by: Bill Wysocki <[email protected]>
@wteouchicago @wwysoc2
adds article.
bedefc8 
Co-authored-by: Bill Wysocki <[email protected]>
@wteouchicago
more PR feedback changes
6d330ca
@wteouchicago
DOC-454: clarify quick search's input should be for a single entity
08e9a27
@wteouchicago
small wording change
d696cff
@siosonel
Update PP-related release notes, including moving a known issue to fi…
2cfded0 
…xed and listing a new one from recent tests
@siosonel
minor wording change, replace to replaced
38a1fed
@wteouchicago
first pass of pauling changes - screenshots and minor text
e647580
@wteouchicago
changed screenshots, minor text change
fe461e4
@wteouchicago
Merge pull request #420 from NCI-GDC/pauling_release_notes_final
f9cd57b 
Pauling release notes final
@wwysoc2
Merge pull request #421 from NCI-GDC/pauling_users_guide
7c9687c 
Pauling Users Guide update
@siosonel
update the documentation of ProteinPaint-related tools
cea90de
@karishma-gangwani @siosonel
ui update for bam tk tutorial
5176f26
@karishma-gangwani @siosonel
update for oncomatrix images and user guide
7004f3a
@karishma-gangwani @siosonel
resize images and improve resolution
c9135ce
@karishma-gangwani @siosonel
update oncomatrix images
4f62042
wwysoc2 and others added 30 commits May 20, 2025 12:19
@wwysoc2
fixed version link
9f642b2
@wwysoc2
Merge pull request #497 from NCI-GDC/sanger-minus-release
9da6cb2 
Sanger minus release
@wwysoc2
Merge pull request #498 from NCI-GDC/develop
19fa561 
Sanger Minus Release
@wteouchicago
template for sanger release notes
0972c17
@wteouchicago
Merge pull request #499 from NCI-GDC/sanger_release_notes_template
f7d6959 
template for sanger release notes
@wteouchicago
user guide updates for sanger
e270948
@karishma-gangwani
fix broken image links
dfecb3f
@wteouchicago
updates cnv tool link
f9796d5
@wteouchicago
Merge pull request #500 from NCI-GDC/sanger-user-guide-updates
c290f27 
user guide updates for sanger
@karishma-gangwani
added user guide for cnv tool
872d52e
@wteouchicago
sanger release notes draft for UC.
67fa0d0
@wteouchicago
typo fixes per PR comments
19e81b6
@wteouchicago
tweaks based on PR comments
f273b3f
@ebusygina
DOC-495: Updated /segment_cnvs description
5a95d48
@wteouchicago
removes curly quotes
970ef25
@wteouchicago
Merge pull request #503 from NCI-GDC/sanger_release_notes_draft1
691e37a 
Sanger release notes draft for UC
@ebusygina
moved the Segment CNV description from the table to the examples sect…
af11d96 
…ion and updated the data source info for the /segment_cnvs endpoint
@ebusygina
Merge pull request #504 from NCI-GDC/evgeniia_DOC-495
91e4d0a 
DOC-495: Updated /segment_cnvs description
@siosonel
rename CNV Tool to Copy Number Segment Tool
68a79e3
@siosonel
Merge pull request #502 from NCI-GDC/cnv-user-guide
f4926fc 
CNV Tool user guide
@siosonel
Add release notes for the ProteinPaint-based tool updates and fixes
ce29e13
@zhangm-02
Added CVNtools to yml files
ef7f0ce
@zhangm-02
Fixed tool name and removed extra i
76496ef
@siosonel
Add missing period to Copy Number Segment release note
38ba8d7
@zhangm-02
Merge pull request #507 from zhangm-02/CNVtool_addition_496
ffe415f 
CNVtool_addition - 496
@siosonel @wwysoc2
remove reference to a removed screen recording
7b9c83f 
Co-authored-by: Bill Wysocki <[email protected]>
@siosonel
Merge pull request #485 from NCI-GDC/user_guide_sanger_release2
2cbd529 
updated user guides, proteinpaint and sequence reads
@siosonel
Merge pull request #505 from NCI-GDC/sanger-pp-release-notes
b363d24 
Add release notes for the ProteinPaint-based tool updates and fixes
@wteouchicago
updates broken links
61d5450
@wteouchicago
Merge pull request #509 from NCI-GDC/DOC-297_fix_links
235f57f 
Fixes some broken links
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