.gitlab-ci.yml

---

include:
  - project: nci-gdc/gitlab-templates
    ref: master
    file:
      - templates/artifacts/python-library.yaml

tox:
  parallel:
    matrix:
      - BUILD_PY_VERSION: [python3.7, python3.8, python3.9, python3.10, python3.11]
        TOX_ENV: [py, fixtures, plugin]
  services:
    - name: docker.osdc.io/ncigdc/ci-postgres-13:${BASE_CONTAINER_VERSION}
      alias: postgres
  variables:
    PG_INDEXD_HOST: postgres
    PG_INDEXD_ROOT_USER: test
    PG_INDEXD_ROOT_PASS: test
    POSTGRES_DB: indexd_test
    POSTGRES_USER: test
    POSTGRES_PASSWORD: test
    POSTGRES_HOST_AUTH_METHOD: trust
  script:
    - pip install "tox<4"
    - tox -e ${TOX_ENV}

.update_pin:
  before_script:
    - !reference [.job-with-ssh-keys, before_script]
    - git clone git@github.com:NCI-GDC/"$REPO_NAME".git
    - cd "$REPO_NAME"
    - git checkout "$UPDATE_PIN_BRANCH_NAME" || git checkout -b "$UPDATE_PIN_BRANCH_NAME"
    - git log -1
    - sed -i 's|github.com/NCI-GDC/indexclient.git@.*#egg=indexclient|github.com/NCI-GDC/indexclient.git@'"$INDEXCLIENT_TARGET_VERSION"'#egg=indexclient|'
      setup.py || true
    - cat setup.py || true
    - sed -i 's|github.com/NCI-GDC/indexclient.git@.*#egg=indexclient|github.com/NCI-GDC/indexclient.git@'"$INDEXCLIENT_TARGET_VERSION"'#egg=indexclient|'
      dev-requirements.in || true
    - cat dev-requirements.in || true
    - pip3 install 'pip<22'     # error importing BAR_TYPES, assert assert isinstance(handler, logging.StreamHandler)
    - pip3 install virtualenv pip-tools==6.3.0 "setuptools_scm<6"

  script:
    - pwd
    - pip-compile -i https://pypi.org/simple
    - pip-compile -i https://pypi.org/simple dev-requirements.in

  after_script:
    - !reference [.job-with-ssh-keys, before_script]
    - cd "$REPO_NAME"
    - pwd
    - git add .
    - git commit -m "Update indexclient to $INDEXCLIENT_TARGET_VERSION $CI_COMMIT_SHA"
    - git push origin "$UPDATE_PIN_BRANCH_NAME"
  needs:
    - tox
  rules:
    - if: $INDEXCLIENT_TARGET_VERSION_OVERRIDE != null
      variables:
        INDEXCLIENT_TARGET_VERSION: $INDEXCLIENT_TARGET_VERSION_OVERRIDE
        UPDATE_PIN_BRANCH_NAME: update-indexclient-to-$INDEXCLIENT_TARGET_VERSION
    - when: manual
      variables:
        INDEXCLIENT_TARGET_VERSION: $CI_COMMIT_REF_NAME
        UPDATE_PIN_BRANCH_NAME: update-indexclient-to-$INDEXCLIENT_TARGET_VERSION

integrate:
  stage: .post
  allow_failure: true
  extends: .update_pin
  parallel:
    matrix:
      - PY_VER: '3.7'
        REPO_NAME: [gdcadmin, gdcbatch, esbuild, sheepdog]
      - PY_VER: '3.8'
        REPO_NAME: [ancillary-services, bio-client, gdcapi, gdcws]
      - PY_VER: '3.9'
        REPO_NAME: [data-tools, gdc-mutation-indexer, inspector]
  image: docker.osdc.io/ncigdc/python${PY_VER}-builder