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@NCI-GDC

Genomic Data Commons

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  1. gdc-workflow-overview gdc-workflow-overview Public

    Overview of GDC Harmonization Workflows

    27 9

  2. gdc-client gdc-client Public

    GDC Data Transfer Tool

    Python 147 40

  3. gdcdatamodel gdcdatamodel Public

    Translation layer between the GDC Data Dictionary and psqlgraph

    Python 28 3

  4. gdcdictionary gdcdictionary Public

    Data dictionary for the GDC

    Python 51 37

  5. psqlgraph psqlgraph Public

    Library for graph-like storage in postgresql using sqlalchemy

    Python 22 6

Repositories

Showing 10 of 84 repositories
  • biobambam-docker Public
    NCI-GDC/biobambam-docker’s past year of commit activity
    Dockerfile 0 Apache-2.0 3 0 2 Updated Feb 4, 2025
  • gdc-frontend-framework Public
    NCI-GDC/gdc-frontend-framework’s past year of commit activity
    TypeScript 10 Apache-2.0 0 0 9 Updated Feb 3, 2025
  • samtools-docker Public
    NCI-GDC/samtools-docker’s past year of commit activity
    Makefile 0 Apache-2.0 1 0 1 Updated Jan 31, 2025
  • gdc-docs Public Forked from NCIP/gdc-docs

    Official repository for GDC User Guides in Markdown format

    NCI-GDC/gdc-docs’s past year of commit activity
    JavaScript 60 Apache-2.0 45 0 15 Updated Jan 30, 2025
  • gdc-rnaseq-cwl Public

    GDC RNA-Seq STAR 2-Pass Workflow

    NCI-GDC/gdc-rnaseq-cwl’s past year of commit activity
    Common Workflow Language 2 Apache-2.0 8 0 1 Updated Jan 30, 2025
  • bio-tarball-to-fastqgz Public

    Tool to extract fastq files from complicated tarballs and provide them as standard gzipped fastq files with metadata as json.

    NCI-GDC/bio-tarball-to-fastqgz’s past year of commit activity
    Python 0 Apache-2.0 0 0 3 Updated Jan 30, 2025
  • indexd Public Forked from uc-cdis/indexd

    Index service server

    NCI-GDC/indexd’s past year of commit activity
    Python 3 Apache-2.0 20 0 10 Updated Jan 28, 2025
  • gdc-rnaseq-tool Public

    Utility scripts for RNA-seq workflows

    NCI-GDC/gdc-rnaseq-tool’s past year of commit activity
    Python 1 Apache-2.0 1 1 2 Updated Jan 28, 2025
  • bio_qcmetrics_tool Public

    Framework for serializing QC metrics into different formats for bioinformatics workflows

    NCI-GDC/bio_qcmetrics_tool’s past year of commit activity
    Python 0 Apache-2.0 0 0 1 Updated Jan 28, 2025
  • bam_readgroup_to_json Public

    Extract a readgroup from a BAM, and write it as json

    NCI-GDC/bam_readgroup_to_json’s past year of commit activity
    Python 0 Apache-2.0 3 0 5 Updated Jan 28, 2025
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