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Started adapting precourse material for Dardel.
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dahlo committed Oct 22, 2024
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Expand Up @@ -15,9 +15,18 @@ upid <- yaml::read_yaml(here("_quarto.yml"))$uppmax_project
upstore <- yaml::read_yaml(here("_quarto.yml"))$uppmax_storage
```

## PDC

Remote computing cluster Dardel at PDC in Stockholm will be use for data analyses. A PDC account is needed to use these resources.
If you do not already have a PDC account, please fill in the form at https://blackfish.pdc.kth.se/cgi-bin/accounts/request.py **at least 2 weeks before the course start** and use the same email that you applied to the course with. Fill in this information about which course it is:

**Lecturer/ Project Leader:** Martin Dahlö
**Course / Project Title:** edu24.uppmax


## UPPMAX

Remote computing cluster UPPMAX will be use for data analyses. A SUPR/NAISS account is needed to use these resources.
Remote computing cluster UPPMAX will be use as a fallback cluster, if there should be any problems at PDC. A SUPR/NAISS account is needed to use these resources. SUPR is also the system that you will handle your own projects in if you want to use them in your research after the course.

If you do not already have one, create an account at [SUPR/NAISS](https://supr.naiss.se). Then, Log in to [SUPR/NAISS](https://supr.naiss.se/), preferably using the SWAMID.

Expand All @@ -38,9 +47,7 @@ Once you are accepted to a project, you should see that project listed under you
![](assets/images/supr-projects.jpg){width="70%"}


Finally you need to request login accounts to NSC and UPPMAX. These are the accounts you use to log in to the actual computers, so they are not the same as your SUPR account. Login to SUPR and go to the [Accounts page](https://supr.naiss.se/account/). Under the **Possible Resource Account Requests** heading click on **Request Account on Tetralith @ NSC** and **Request Account on Rackham @ UPPMAX** button and confirm it on the next page. If either of them are missing from this page, it could be because you already have a login account created (only 1 account per person allowed), or that you have not yet gotten your project memberships approved.

![](assets/images/supr-tetralith.jpg){width="70%"}
Finally you need to request a login account to UPPMAX. This will be the account you use to log in to the actual computers, so it is not the same as your SUPR account. Login to SUPR and go to the [Accounts page](https://supr.naiss.se/account/). Under the **Possible Resource Account Requests** heading click on **Request Account on Rackham @ UPPMAX** button and confirm it on the next page. If it is missing from this page, it could be because you already have a login account created (only 1 account per person allowed), or that you have not yet gotten your project memberships approved.

Checking your request and approving your account requires some manual work, so you might have to wait for some time (up to a working day) before the next step. When the account is ready to be created, you will receive an email to your registered email address (shown in your SUPR contact information) with information on how to proceed. You will get a one-time URL that you use to get the password (within seven days) to login to the cluster with. The link is only valid for 1 visit, so write down the password you get. When that has been done, the account ready for use within 15 minutes and you can then login using your password. Once you have logged into the cluster you can change your password by typing `passwd` in the terminal and follow the instuctions.

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