Skip to content

Commit

Permalink
Fixed broken url and typo
Browse files Browse the repository at this point in the history
  • Loading branch information
royfrancis committed Nov 16, 2023
1 parent d4ab3dd commit 203f089
Showing 1 changed file with 2 additions and 2 deletions.
4 changes: 2 additions & 2 deletions topics/rnaseq/lab_rnaseq.qmd
Original file line number Diff line number Diff line change
Expand Up @@ -79,7 +79,7 @@ data.frame(Accession=c("SRR3222409","SRR3222410","SRR3222411","SRR3222412","SRR3
```

::: {.callout-note}
For the purpose of this tutorial, to shorten the time needed to run various bioinformatics steps, we have picked reads for a single chromosome (Chr 19) and downsampled the reads. We randomly sampled, without replacement, 25% reads from each sample, using `fastq-sample` from the toolset [fastq-tools](https://homes.cs.washington.edu/~dcjones/fastq-tools/).
For the purpose of this tutorial, to shorten the time needed to run various bioinformatics steps, we have picked reads for a single chromosome (Chr 19) and downsampled the reads. We randomly sampled, without replacement, 25% reads from each sample, using `fastq-sample` from the toolset [fastq-tools](https://github.com/dcjones/fastq-tools).
:::

## Main exercise
Expand Down Expand Up @@ -861,7 +861,7 @@ cat(paste0("cp ",path_data,"/main/5_dge/dge.R .\n"))
cat(paste0("cp ",path_data,"/main/5_dge/counts_full.txt .\n"))
```

Now, run the R script from the schell in `5_dge` directory.
Now, run the R script from the shell in `5_dge` directory.

```{sh,eval=FALSE}
Rscript dge.R
Expand Down

0 comments on commit 203f089

Please sign in to comment.