Skip to content

Commit

Permalink
Update documentation
Browse files Browse the repository at this point in the history
  • Loading branch information
mhasoba committed Jan 17, 2025
1 parent d1f390a commit ef97b5a
Show file tree
Hide file tree
Showing 61 changed files with 9,034 additions and 1,148 deletions.
2 changes: 1 addition & 1 deletion .buildinfo
Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@
# Sphinx build info version 1
# This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
config: a69159fed7e1fb0a1e4508b289bb66f4
config: 6d97f13675677fb72847f688992ae349
tags: 645f666f9bcd5a90fca523b33c5a78b7
16 changes: 11 additions & 5 deletions HPC/Instructions/2024_11_16_HPC_worksheet.html
Original file line number Diff line number Diff line change
Expand Up @@ -30,7 +30,7 @@

<link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
<link rel="stylesheet" type="text/css" href="../../_static/styles/sphinx-book-theme.css?v=a3416100" />
<link rel="stylesheet" type="text/css" href="../../_static/togglebutton.css?v=3943d584" />
<link rel="stylesheet" type="text/css" href="../../_static/togglebutton.css?v=13237357" />
<link rel="stylesheet" type="text/css" href="../../_static/copybutton.css?v=76b2166b" />
<link rel="stylesheet" type="text/css" href="../../_static/mystnb.4510f1fc1dee50b3e5859aac5469c37c29e427902b24a333a5f9fcb2f0b3ac41.css?v=be8a1c11" />
<link rel="stylesheet" type="text/css" href="../../_static/sphinx-thebe.css?v=4fa983c6" />
Expand All @@ -45,10 +45,13 @@
<script src="../../_static/documentation_options.js?v=9eb32ce0"></script>
<script src="../../_static/doctools.js?v=9a2dae69"></script>
<script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
<script src="../../_static/togglebutton.js?v=3e7854f7"></script>
<script src="../../_static/clipboard.min.js?v=a7894cd8"></script>
<script src="../../_static/copybutton.js?v=f281be69"></script>
<script src="../../_static/scripts/sphinx-book-theme.js?v=887ef09a"></script>
<script>let toggleHintShow = 'Click to show';</script>
<script>let toggleHintHide = 'Click to hide';</script>
<script>let toggleOpenOnPrint = 'true';</script>
<script src="../../_static/togglebutton.js?v=4a39c7ea"></script>
<script>var togglebuttonSelector = '.toggle, .admonition.dropdown';</script>
<script src="../../_static/design-tabs.js?v=f930bc37"></script>
<script>const THEBE_JS_URL = "https://unpkg.com/[email protected]/lib/index.js"; const thebe_selector = ".thebe,.cell"; const thebe_selector_input = "pre"; const thebe_selector_output = ".output, .cell_output"</script>
Expand Down Expand Up @@ -192,16 +195,15 @@
<ul class="nav bd-sidenav">
<li class="toctree-l1"><a class="reference internal" href="../../notebooks/MetabolicBasis.html">The Metabolic Basis of Ecology and Evolutionary dynamics</a></li>
<li class="toctree-l1"><a class="reference internal" href="../../notebooks/Populations.html">Single Populations</a></li>

</ul>
<p aria-level="2" class="caption" role="heading"><span class="caption-text">Basic Data Analyses and Statistics</span></p>
<ul class="nav bd-sidenav">
<li class="toctree-l1"><a class="reference internal" href="../../intro-Stats.html">Introduction</a></li>
<li class="toctree-l1"><a class="reference internal" href="../../notebooks/Data_R.html">Data Management and Visualization</a></li>
<li class="toctree-l1"><a class="reference internal" href="../../notebooks/ExpDesign.html">Experimental design and Data exploration</a></li>
<li class="toctree-l1"><a class="reference internal" href="../../notebooks/t_F_tests.html">Basic hypothesis testing: <span class="math notranslate nohighlight">\(t\)</span> and <span class="math notranslate nohighlight">\(F\)</span> tests</a></li>
<li class="toctree-l1"><a class="reference internal" href="../../notebooks/regress.html">Linear Models: Regression</a></li>
<li class="toctree-l1"><a class="reference internal" href="../../notebooks/anova.html">Linear Models: Analysis of variance</a></li>
<li class="toctree-l1"><a class="reference internal" href="../../notebooks/Regress.html">Linear Models: Regression</a></li>
<li class="toctree-l1"><a class="reference internal" href="../../notebooks/Anova.html">Linear Models: Analysis of variance</a></li>
<li class="toctree-l1"><a class="reference internal" href="../../notebooks/MulExpl.html">Linear Models: Multiple explanatory variables</a></li>
<li class="toctree-l1"><a class="reference internal" href="../../notebooks/MulExplInter.html">Linear Models: Multiple variables with interactions</a></li>
<li class="toctree-l1"><a class="reference internal" href="../../notebooks/ModelSimp.html">Model simplification</a></li>
Expand All @@ -211,6 +213,10 @@
<li class="toctree-l1"><a class="reference internal" href="../../notebooks/glm.html">Generalised Linear Models</a></li>
<li class="toctree-l1"><a class="reference internal" href="../../notebooks/NLLS.html">Model Fitting using Non-linear Least-squares</a></li>
</ul>
<p aria-level="2" class="caption" role="heading"><span class="caption-text">References</span></p>
<ul class="nav bd-sidenav">
<li class="toctree-l1"><a class="reference internal" href="../../references.html">References</a></li>
</ul>
<p aria-level="2" class="caption" role="heading"><span class="caption-text">Appendices</span></p>
<ul class="nav bd-sidenav">
<li class="toctree-l1"><a class="reference internal" href="../../notebooks/Appendix-JupyIntro.html">Introduction to Jupyter</a></li>
Expand Down
16 changes: 11 additions & 5 deletions HPC/Instructions/HPC_practical_mark_scheme_2024.html
Original file line number Diff line number Diff line change
Expand Up @@ -30,7 +30,7 @@

<link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
<link rel="stylesheet" type="text/css" href="../../_static/styles/sphinx-book-theme.css?v=a3416100" />
<link rel="stylesheet" type="text/css" href="../../_static/togglebutton.css?v=3943d584" />
<link rel="stylesheet" type="text/css" href="../../_static/togglebutton.css?v=13237357" />
<link rel="stylesheet" type="text/css" href="../../_static/copybutton.css?v=76b2166b" />
<link rel="stylesheet" type="text/css" href="../../_static/mystnb.4510f1fc1dee50b3e5859aac5469c37c29e427902b24a333a5f9fcb2f0b3ac41.css?v=be8a1c11" />
<link rel="stylesheet" type="text/css" href="../../_static/sphinx-thebe.css?v=4fa983c6" />
Expand All @@ -45,10 +45,13 @@
<script src="../../_static/documentation_options.js?v=9eb32ce0"></script>
<script src="../../_static/doctools.js?v=9a2dae69"></script>
<script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
<script src="../../_static/togglebutton.js?v=3e7854f7"></script>
<script src="../../_static/clipboard.min.js?v=a7894cd8"></script>
<script src="../../_static/copybutton.js?v=f281be69"></script>
<script src="../../_static/scripts/sphinx-book-theme.js?v=887ef09a"></script>
<script>let toggleHintShow = 'Click to show';</script>
<script>let toggleHintHide = 'Click to hide';</script>
<script>let toggleOpenOnPrint = 'true';</script>
<script src="../../_static/togglebutton.js?v=4a39c7ea"></script>
<script>var togglebuttonSelector = '.toggle, .admonition.dropdown';</script>
<script src="../../_static/design-tabs.js?v=f930bc37"></script>
<script>const THEBE_JS_URL = "https://unpkg.com/[email protected]/lib/index.js"; const thebe_selector = ".thebe,.cell"; const thebe_selector_input = "pre"; const thebe_selector_output = ".output, .cell_output"</script>
Expand Down Expand Up @@ -190,16 +193,15 @@
<ul class="nav bd-sidenav">
<li class="toctree-l1"><a class="reference internal" href="../../notebooks/MetabolicBasis.html">The Metabolic Basis of Ecology and Evolutionary dynamics</a></li>
<li class="toctree-l1"><a class="reference internal" href="../../notebooks/Populations.html">Single Populations</a></li>

</ul>
<p aria-level="2" class="caption" role="heading"><span class="caption-text">Basic Data Analyses and Statistics</span></p>
<ul class="nav bd-sidenav">
<li class="toctree-l1"><a class="reference internal" href="../../intro-Stats.html">Introduction</a></li>
<li class="toctree-l1"><a class="reference internal" href="../../notebooks/Data_R.html">Data Management and Visualization</a></li>
<li class="toctree-l1"><a class="reference internal" href="../../notebooks/ExpDesign.html">Experimental design and Data exploration</a></li>
<li class="toctree-l1"><a class="reference internal" href="../../notebooks/t_F_tests.html">Basic hypothesis testing: <span class="math notranslate nohighlight">\(t\)</span> and <span class="math notranslate nohighlight">\(F\)</span> tests</a></li>
<li class="toctree-l1"><a class="reference internal" href="../../notebooks/regress.html">Linear Models: Regression</a></li>
<li class="toctree-l1"><a class="reference internal" href="../../notebooks/anova.html">Linear Models: Analysis of variance</a></li>
<li class="toctree-l1"><a class="reference internal" href="../../notebooks/Regress.html">Linear Models: Regression</a></li>
<li class="toctree-l1"><a class="reference internal" href="../../notebooks/Anova.html">Linear Models: Analysis of variance</a></li>
<li class="toctree-l1"><a class="reference internal" href="../../notebooks/MulExpl.html">Linear Models: Multiple explanatory variables</a></li>
<li class="toctree-l1"><a class="reference internal" href="../../notebooks/MulExplInter.html">Linear Models: Multiple variables with interactions</a></li>
<li class="toctree-l1"><a class="reference internal" href="../../notebooks/ModelSimp.html">Model simplification</a></li>
Expand All @@ -209,6 +211,10 @@
<li class="toctree-l1"><a class="reference internal" href="../../notebooks/glm.html">Generalised Linear Models</a></li>
<li class="toctree-l1"><a class="reference internal" href="../../notebooks/NLLS.html">Model Fitting using Non-linear Least-squares</a></li>
</ul>
<p aria-level="2" class="caption" role="heading"><span class="caption-text">References</span></p>
<ul class="nav bd-sidenav">
<li class="toctree-l1"><a class="reference internal" href="../../references.html">References</a></li>
</ul>
<p aria-level="2" class="caption" role="heading"><span class="caption-text">Appendices</span></p>
<ul class="nav bd-sidenav">
<li class="toctree-l1"><a class="reference internal" href="../../notebooks/Appendix-JupyIntro.html">Introduction to Jupyter</a></li>
Expand Down
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Loading

0 comments on commit ef97b5a

Please sign in to comment.