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28 Open 150 Closed
28 Open 150 Closed
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Issues list

Question about inStrain compare SNV pooling for low coverage variants
#193 opened Oct 11, 2024 by priscalim00
Clustering Error, StbError, and Memory Usage for inStrain Compare
#192 opened Oct 7, 2024 by gillianpatton
How to get r2 value of synonymous (or nonsynonymous) variants linked to other synonymous (or nonsynonymous) variants?
#191 opened Sep 6, 2024 by ChenTianYi99
Error for using conda install
#190 opened Aug 12, 2024 by Xinpeng021001
Question about dRep for getting representative genome database?
#189 opened Jul 9, 2024 by akques
2
instrain compare --bams for pooled_SNV
#187 opened Jun 13, 2024 by Lyylsys
5
Detailed calculation of breadth (and coverage)
#185 opened May 27, 2024 by anniewest
3
unable to lock file, errno = 37, error message = 'No locks available'
#183 opened May 23, 2024 by 473021677
2
Questions about read coverage and breadth filtration.
#179 opened Apr 9, 2024 by ChenTianYi99
1
How to calculate Tajima'D or fixation indices (FST) using inStrain files?
#177 opened Apr 7, 2024 by ChenTianYi99
1
How should one interpret genes displaying a high pN value alongside a pS value of 0
#175 opened Apr 4, 2024 by haihao999
1
what`s the meaning of the no data between the gene
#172 opened Mar 22, 2024 by lori1996
3
Inconsistent order of columns in output file *_genome_info.tsv bug Something isn't working
#169 opened Mar 18, 2024 by yunkit
1
inStrain compare - output
#164 opened Oct 31, 2023 by marina-vn
9
DEBUG:no_length will not be considered as part of the genime
#163 opened Oct 30, 2023 by Xiaoxin9115
3
Issue in statistical analysis of nucleotide diversity.
#162 opened Oct 24, 2023 by ChenTianYi99
2
SNP calling naive question
#161 opened Oct 17, 2023 by ntromas
5
genes with allele frequency differences
#160 opened Sep 28, 2023 by haihao999
2
Enquiry about "codecs.py" and strain relative abundance
#159 opened Sep 27, 2023 by jiangys30
3
inStrain compare sometimes hanging up
#148 opened May 2, 2023 by cusoiv
13
InStrain for PacBio longreads enhancement New feature or request
#104 opened May 30, 2022 by DanielSpari
3
The question for running command "inStrain profile"
#103 opened Mar 27, 2022 by toggle0511
4
Coverage discrepancy with inStrain profile enhancement New feature or request
#99 opened Dec 18, 2021 by cswift3
6
Pass input profiles in text file to inStrain compare enhancement New feature or request
#94 opened Dec 8, 2021 by jdwinkler-lanzatech
2
Insights regarding nucleotide diversity vs SNVs
#92 opened Nov 11, 2021 by DDavila10
4
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