Add paper drafts

docs/full_paper/bmc_article.bbl

@@ -0,0 +1,201 @@
+%% BioMed_Central_Bib_Style_v1.01
+
+\begin{thebibliography}{6}
+% BibTex style file: bmc-mathphys.bst (version 2.1), 2014-07-24
+\ifx \bisbn   \undefined \def \bisbn  #1{ISBN #1}\fi
+\ifx \binits  \undefined \def \binits#1{#1}\fi
+\ifx \bauthor  \undefined \def \bauthor#1{#1}\fi
+\ifx \batitle  \undefined \def \batitle#1{#1}\fi
+\ifx \bjtitle  \undefined \def \bjtitle#1{#1}\fi
+\ifx \bvolume  \undefined \def \bvolume#1{\textbf{#1}}\fi
+\ifx \byear  \undefined \def \byear#1{#1}\fi
+\ifx \bissue  \undefined \def \bissue#1{#1}\fi
+\ifx \bfpage  \undefined \def \bfpage#1{#1}\fi
+\ifx \blpage  \undefined \def \blpage #1{#1}\fi
+\ifx \burl  \undefined \def \burl#1{\textsf{#1}}\fi
+\ifx \doiurl  \undefined \def \doiurl#1{\textsf{#1}}\fi
+\ifx \betal  \undefined \def \betal{\textit{et al.}}\fi
+\ifx \binstitute  \undefined \def \binstitute#1{#1}\fi
+\ifx \binstitutionaled  \undefined \def \binstitutionaled#1{#1}\fi
+\ifx \bctitle  \undefined \def \bctitle#1{#1}\fi
+\ifx \beditor  \undefined \def \beditor#1{#1}\fi
+\ifx \bpublisher  \undefined \def \bpublisher#1{#1}\fi
+\ifx \bbtitle  \undefined \def \bbtitle#1{#1}\fi
+\ifx \bedition  \undefined \def \bedition#1{#1}\fi
+\ifx \bseriesno  \undefined \def \bseriesno#1{#1}\fi
+\ifx \blocation  \undefined \def \blocation#1{#1}\fi
+\ifx \bsertitle  \undefined \def \bsertitle#1{#1}\fi
+\ifx \bsnm \undefined \def \bsnm#1{#1}\fi
+\ifx \bsuffix \undefined \def \bsuffix#1{#1}\fi
+\ifx \bparticle \undefined \def \bparticle#1{#1}\fi
+\ifx \barticle \undefined \def \barticle#1{#1}\fi
+\ifx \bconfdate \undefined \def \bconfdate #1{#1}\fi
+\ifx \botherref \undefined \def \botherref #1{#1}\fi
+\ifx \url \undefined \def \url#1{\textsf{#1}}\fi
+\ifx \bchapter \undefined \def \bchapter#1{#1}\fi
+\ifx \bbook \undefined \def \bbook#1{#1}\fi
+\ifx \bcomment \undefined \def \bcomment#1{#1}\fi
+\ifx \oauthor \undefined \def \oauthor#1{#1}\fi
+\ifx \citeauthoryear \undefined \def \citeauthoryear#1{#1}\fi
+\ifx \endbibitem  \undefined \def \endbibitem {}\fi
+\ifx \bconflocation  \undefined \def \bconflocation#1{#1}\fi
+\ifx \arxivurl  \undefined \def \arxivurl#1{\textsf{#1}}\fi
+\csname PreBibitemsHook\endcsname
+
+%%% 1
+\bibitem{koon}
+\begin{barticle}
+\bauthor{\bsnm{Koonin}, \binits{E.V.}},
+\bauthor{\bsnm{Altschul}, \binits{S.F.}},
+\bauthor{\bsnm{Bork}, \binits{P.}}:
+\batitle{Brca1 protein products: functional motifs}.
+\bjtitle{Nat. Genet.}
+\bvolume{13},
+\bfpage{266}--\blpage{267}
+(\byear{1996})
+\end{barticle}
+\endbibitem
+
+%%% 2
+\bibitem{xjon}
+\begin{bchapter}
+\bauthor{\bsnm{Jones}, \binits{X.}}:
+\bctitle{Zeolites and synthetic mechanisms}.
+In: \beditor{\bsnm{Smith}, \binits{Y.}} (ed.)
+\bbtitle{Proceedings of the First National Conference on Porous Sieves: 27-30
+  June 1996; Baltimore},
+pp. \bfpage{16}--\blpage{27}
+(\byear{1996})
+\end{bchapter}
+\endbibitem
+
+%%% 3
+\bibitem{marg}
+\begin{bbook}
+\bauthor{\bsnm{Margulis}, \binits{L.}}:
+\bbtitle{Origin of Eukaryotic Cells}.
+\bpublisher{Yale University Press},
+\blocation{New Haven}
+(\byear{1970})
+\end{bbook}
+\endbibitem
+
+%%% 4
+\bibitem{schn}
+\begin{bchapter}
+\bauthor{\bsnm{Schnepf}, \binits{E.}}:
+\bctitle{From prey via endosymbiont to plastids: comparative studies in
+  dinoflagellates}.
+In: \beditor{\bsnm{Lewin}, \binits{R.A.}} (ed.)
+\bbtitle{Origins of Plastids},
+\bedition{2nd} edn.,
+pp. \bfpage{53}--\blpage{76}.
+\bpublisher{Chapman and Hall},
+\blocation{New York}
+(\byear{1993})
+\end{bchapter}
+\endbibitem
+
+%%% 5
+\bibitem{koha}
+\begin{botherref}
+\oauthor{\bsnm{Kohavi}, \binits{R.}}:
+Wrappers for performance enhancement and obvious decision graphs.
+PhD thesis,
+Stanford University, Computer Science Department
+(1995)
+\end{botherref}
+\endbibitem
+
+%%% 6
+\bibitem{issnic}
+\begin{botherref}
+\oauthor{\bsnm{{ISSN International Centre}}}:
+The ISSN register
+(2006).
+\url{http://www.issn.org}
+Accessed Accessed 20 Feb 2007
+\end{botherref}
+\endbibitem
+
+\end{thebibliography}
+
+\newcommand{\BMCxmlcomment}[1]{}
+
+\BMCxmlcomment{
+
+<refgrp>
+
+<bibl id="B1">
+  <title><p>BRCA1 protein products: functional motifs</p></title>
+  <aug>
+    <au><snm>Koonin</snm><fnm>E V</fnm></au>
+    <au><snm>Altschul</snm><fnm>S F</fnm></au>
+    <au><snm>Bork</snm><fnm>P</fnm></au>
+  </aug>
+  <source>Nat. Genet.</source>
+  <pubdate>1996</pubdate>
+  <volume>13</volume>
+  <fpage>266</fpage>
+  <lpage>267</lpage>
+</bibl>
+
+<bibl id="B2">
+  <title><p>Zeolites and synthetic mechanisms</p></title>
+  <aug>
+    <au><snm>Jones</snm><fnm>X</fnm></au>
+  </aug>
+  <source>Proceedings of the First National Conference on Porous Sieves: 27-30
+  June 1996; Baltimore</source>
+  <editor>Y Smith</editor>
+  <pubdate>1996</pubdate>
+  <fpage>16</fpage>
+  <lpage>27</lpage>
+</bibl>
+
+<bibl id="B3">
+  <title><p>Origin of Eukaryotic Cells</p></title>
+  <aug>
+    <au><snm>Margulis</snm><fnm>L</fnm></au>
+  </aug>
+  <publisher>New Haven: Yale University Press</publisher>
+  <pubdate>1970</pubdate>
+</bibl>
+
+<bibl id="B4">
+  <title><p>From prey via endosymbiont to plastids: comparative studies in
+  dinoflagellates</p></title>
+  <aug>
+    <au><snm>Schnepf</snm><fnm>E</fnm></au>
+  </aug>
+  <source>Origins of Plastids</source>
+  <publisher>New York: Chapman and Hall</publisher>
+  <editor>R A Lewin</editor>
+  <edition>2</edition>
+  <pubdate>1993</pubdate>
+  <fpage>53</fpage>
+  <lpage>76</lpage>
+</bibl>
+
+<bibl id="B5">
+  <title><p>Wrappers for performance enhancement and obvious decision
+  graphs</p></title>
+  <aug>
+    <au><snm>Kohavi</snm><fnm>R</fnm></au>
+  </aug>
+  <source>PhD thesis</source>
+  <publisher>Stanford University, Computer Science Department</publisher>
+  <pubdate>1995</pubdate>
+</bibl>
+
+<bibl id="B6">
+  <title><p>The ISSN register</p></title>
+  <aug>
+    <au><cnm>{ISSN International Centre}</cnm></au>
+  </aug>
+  <pubdate>2006</pubdate>
+  <url>http://www.issn.org</url>
+</bibl>
+
+</refgrp>
+} % end of \BMCxmlcomment

docs/full_paper/bmc_article.bib

@@ -0,0 +1,88 @@
+% bmc_article.bib
+% 
+%  An example of bibtex entries.
+%  Entries taken from BMC instructions for authors page.
+
+% uncomment next line to make author-year bibliography
+% @settings{label, options="nameyear"}
+
+@article{blank,
+    author  = {}, 
+    title   = {},
+    journal = {}, 
+    year    = {},
+    month   = {}, 
+    volume  = {}, 
+    number  = {}, 
+    pages   = {},
+    note    = {} 
+}    
+
+% Article within a journal
+@article{koon,
+    author  = {Koonin, E V and Altschul, S F and P Bork}, 
+    title   = {BRCA1 protein products: functional motifs}, 
+    journal = {Nat. Genet.}, 
+    year    = {1996},
+    volume  = {13}, 
+    pages   = {266-267}
+}    
+
+%%%%%%%%
+% Article within conference proceedings
+@inproceedings{xjon,
+    author    = {X Jones}, 
+    title     = {Zeolites and synthetic mechanisms},
+    booktitle = {Proceedings of the First National Conference on 
+                Porous Sieves: 27-30 June 1996; Baltimore},
+    year      = {1996},
+    editor    = {Y Smith}, 
+    pages     = {16-27},
+}    
+
+%%%%%%%%
+%  Book chapter, or article within a book
+@incollection{schn,
+    author    = {E Schnepf}, 
+    title     = {From prey via endosymbiont to plastids: 
+             comparative studies in dinoflagellates},
+    booktitle = {Origins of Plastids}, 
+    editor    = {R A Lewin}, 
+    publisher = {Chapman and Hall},
+    pages     = {53-76}, 
+    year      = {1993},
+    address = {New York}, 
+    edition = {2nd} 
+}    
+
+%%%%%%%%
+% Complete book
+@book{marg,
+    author    = {L Margulis}, 
+    title     = {Origin of Eukaryotic Cells},
+    publisher = {Yale University Press}, 
+    year      = {1970},
+    address   = {New Haven} 
+}
+
+
+%%%%%%%%
+% PHD Thesis
+@phdthesis{koha,
+    author = {R Kohavi}, 
+    title  = {Wrappers for performance enhancement and
+             obvious decision graphs},
+    school = {Stanford University, Computer Science Department},
+    year   = {1995}
+}
+
+%%%%%%%%
+%  Miscellaneous: webpage link/urL, etc/
+@misc{issnic,
+    author  = {{ISSN International Centre}},
+    title = {The ISSN register},
+    url = {http://www.issn.org},
+    year = {2006},
+    urldate={Accessed 20 Feb 2007}
+}
+