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Introduction

This platform provides the ability to access a variety of well-known RNA-Seq Alignment and Counting platforms, starting from either raw or countable data created by most RNA-Seq protocols. We provide a set of Rscripts that work in concert to do this processing, allowing modular processing with high levels of user control. Additionally, because of the wide array of options that a user can select given a single run, we also provide a user interface written in Java that helps the user to select the correct settings for them and effectively generate an attribute file which is used by the run.

This platform is required to be run on a Linux platform either directly or through SSH from a different operating platform.