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56 question number mismatch of the interactive disposition table #74

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Merged
merged 4 commits into from
Feb 7, 2025
Merged

56 question number mismatch of the interactive disposition table #74

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932cb25
change the default to be aligned with new structure.
niup0 Feb 3, 2025
52337a9
Fixed the mismatch numbers in sublists of medical disposition. Bugs fix.
niup0 Feb 3, 2025
f6a28bd
Style code (GHA)
niup0 Feb 3, 2025
5c00902
dovument updates
niup0 Feb 3, 2025
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8 changes: 5 additions & 3 deletions R/react_disposition.R
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Original file line number Diff line number Diff line change
Expand Up @@ -55,8 +55,8 @@ react_disposition <- function(
metadata_ae,
analysis = "disp",
trtvar = "trt01a",
population = metadata_sl$plan[metadata_sl$plan$analysis == analysis, ]$population,
sl_parameter = paste(metadata_sl$plan[metadata_sl$plan$analysis == analysis, ]$parameter, collapse = ";"),
population = metadata_sl$plan$population[metadata_sl$plan$analysis == analysis],
sl_parameter = paste(metadata_sl$plan$parameter[metadata_sl$plan$analysis == analysis], collapse = ";"),
sl_col_selected = NULL,
sl_col_names = NULL,
ae_observation = "wk24",
Expand Down Expand Up @@ -166,12 +166,14 @@ react_disposition <- function(
if (!is.na(tbl_sl$name[index]) & !(dcsreas %in% c("participants in population", "discontinued", "participants ongoing", "completed"))) {
if (stringr::str_trim(tolower(tbl_sl$var_label[index])) == "trial disposition") {
var <- metadata_sl$parameter[["disposition"]]$var
var_lower <- metadata_sl$parameter[["disposition"]]$var_lower
}
if (stringr::str_trim(tolower(tbl_sl$var_label[index])) == "participant study medication disposition") {
var <- metadata_sl$parameter[["medical-disposition"]]$var
var_lower <- metadata_sl$parameter[["medical-disposition"]]$var_lower
}
# get discontinued subject list
usubjids <- x_sl$meta$data_population$USUBJID |> subset(tolower(x_sl$meta$data_population$DCSREAS) == dcsreas & tolower(x_sl$meta$data_population[[var]]) == "discontinued")
usubjids <- x_sl$meta$data_population$USUBJID |> subset(tolower(x_sl$meta$data_population[[var_lower]]) == dcsreas & tolower(x_sl$meta$data_population[[var]]) == "discontinued")
subj_list <- metadata_sl$data_population |> subset(
subset = metadata_sl$data_population$USUBJID %in% usubjids,
select = u_sl_col_selected
Expand Down
6 changes: 3 additions & 3 deletions man/react_disposition.Rd
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