Fix dependency issues

v0.1.29

Set version to 0.1.29

Support BioPython >= 1.78

v0.1.28

Set version to 0.1.28

Support gbff genbank extension

v0.1.27

Set version to 0.1.27

Handle Pfam boundaries in incomplete CDS

v0.1.25

Set version to 0.1.25

Handle Pfam boundaries in incomplete CDS

v0.1.24

Set version to 0.1.24

Enable antiSMASH JSON output

antiSMASH JSON output is created by default in output folder

Fix protein IDs in --protein mode, add tests

v0.1.18

Set version to 0.1.18

Add experimental --protein mode

• You can now detect BGCs in a protein FASTA sequence using deepbgc pipeline --protein. This is done by creating an artificial sequence where all proteins are found right after another on the + strand
• You can now prepare protein FASTA sequences into a Pfam TSV file using deepbgc prepare --protein.
• Fixed ROC and Precision-Recall plots

Support Prodigal "-p meta" mode

• add --prodigal-meta-mode argument to deepbgc prepare and deepbgc pipeline to enable detecting genes in short contigs
• fix Python 2.7 incompatibility error when detecting Pfam domains

Support gzipped input files

• Added support for gzipped input sequence files (should end with .gz extension)
• Improved error message when parsing unknown format