Merge pull request #143 from MannLabs/legacy_development

Legacy development
MannLabs · Jan 27, 2025 · 519ca1b · 519ca1b
2 parents 4979454 + c30b5e6
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diff --git a/.gitmodules b/.gitmodules
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+[submodule "examples/notebooks"]
+	path = examples/notebooks
+	url = https://github.com/MannLabs/scPortrait-notebooks
diff --git a/development/processing_notebook.ipynb b/development/processing_notebook.ipynb
diff --git a/example_data/example_1/config_example1.yml b/example_data/example_1/config_example1.yml
diff --git a/example_data/example_1/input_images/Ch1.tif b/example_data/example_1/input_images/Ch1.tif
diff --git a/example_data/example_1/input_images/Ch2.tif b/example_data/example_1/input_images/Ch2.tif
diff --git a/example_data/example_1/input_images/Ch3.tif b/example_data/example_1/input_images/Ch3.tif
diff --git a/example_data/example_2/config_example2.yml b/example_data/example_2/config_example2.yml
diff --git a/example_data/example_2/input_images/ch1.tif b/example_data/example_2/input_images/ch1.tif
diff --git a/example_data/example_2/input_images/ch2.tif b/example_data/example_2/input_images/ch2.tif
diff --git a/example_data/example_2/input_images/ch3.tif b/example_data/example_2/input_images/ch3.tif
diff --git a/example_data/example_2/processing_notebook.ipynb b/example_data/example_2/processing_notebook.ipynb
diff --git a/example_data/example_3/config_example3.yml b/example_data/example_3/config_example3.yml
diff --git a/example_data/example_3/input_images/Ch1.tif b/example_data/example_3/input_images/Ch1.tif
diff --git a/example_data/example_3/input_images/Ch2.tif b/example_data/example_3/input_images/Ch2.tif
diff --git a/example_data/example_3/input_images/Ch3.tif b/example_data/example_3/input_images/Ch3.tif
diff --git a/example_data/example_4/config_example4.yml b/example_data/example_4/config_example4.yml
diff --git a/example_data/example_4/input_images/ch1.tif b/example_data/example_4/input_images/ch1.tif
diff --git a/example_data/example_4/input_images/ch2.tif b/example_data/example_4/input_images/ch2.tif
diff --git a/example_data/example_4/input_images/ch3.tif b/example_data/example_4/input_images/ch3.tif