fix tests

MannLabs · Jan 22, 2025 · 514572b · 514572b
1 parent ae27101
commit 514572b
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Showing 2 changed files with 3 additions and 3 deletions.
diff --git a/tests/run_quicktests.sh b/tests/run_quicktests.sh
@@ -1,7 +1,7 @@
 conda activate directlfq
 pip install -r ../requirements/requirements_development.txt
 cd quicktests
-pytest --nbmake run_pipeline_w_different_input_formats.ipynb
+python -m pytest --nbmake run_pipeline_w_different_input_formats.ipynb
 directlfq lfq -i ../../test_data/system_tests/quicktests/diann/shortened_input.tsv
 cd ..
 conda deactivate
diff --git a/tests/run_ratio_tests.sh b/tests/run_ratio_tests.sh
@@ -4,7 +4,7 @@ cd ratio_tests
 pip install pytest
 pip install nbmake==1.5.3
 echo "Running ratio tests"
-pytest --nbmake systemtest_ratio_mixed_species1.ipynb --nbmake-timeout=1800
-pytest --nbmake systemtest_ratio_mixed_species2.ipynb --nbmake-timeout=1800
+python -m pytest --nbmake systemtest_ratio_mixed_species1.ipynb --nbmake-timeout=1800
+python -m pytest --nbmake systemtest_ratio_mixed_species2.ipynb --nbmake-timeout=1800
 cd ..
 conda deactivate