Merge branch 'development' into 48-more-linting

MannLabs · Jun 12, 2024 · 39ebf43 · 39ebf43
2 parents 1482142 + 4fa470a
commit 39ebf43
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Showing 3 changed files with 4 additions and 2 deletions.
diff --git a/alpharaw/viz/df_utils.py b/alpharaw/viz/df_utils.py
@@ -383,7 +383,7 @@ def make_precursor_fragment_df(
     precursor_df = pd.DataFrame(
         dict(sequence=[sequence], mods=[mods], mod_sites=[mod_sites], charge=charge)
     )
-    calc_precursor_mz(precursor_df)
+    update_precursor_mz(precursor_df)
     if include_precursor_isotopes:
         calc_precursor_isotope_intensity(precursor_df, max_isotope=max_isotope)
     if include_fragments:

diff --git a/extra_requirements/development.txt b/extra_requirements/development.txt
@@ -25,4 +25,6 @@ furo
 alphabase>=1.1.0
 alphatims
 
+pytest
 pre-commit==3.7.0
+nbmake==1.5.3
diff --git a/nbs_tests/test_viz_multinotch.ipynb b/nbs_tests/test_viz_multinotch.ipynb
@@ -237,7 +237,7 @@
     "    \"mod_sites\": [\"\",\"9\"],\n",
     "    \"rt\": [4.3,4.3],\n",
     "})\n",
-    "precursur_func.calc_precursor_mz(psm_df)\n",
+    "precursur_func.update_precursor_mz(psm_df)\n",
     "precursur_func.calc_precursor_isotope(psm_df)"
    ]
   },