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pr treat node and edge separate in network table and node_search zod requirements update #41

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pr treat node and edge separate in network table and node_search zod requirements update #41

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15ee3ee
init commit for demo
AndrewLutsky Apr 1, 2025
38aa199
removed Unnamed: 0 column
AndrewLutsky May 8, 2025
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4 changes: 2 additions & 2 deletions app/api/knowledge_graph/node_search/route.ts
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Original file line number Diff line number Diff line change
Expand Up @@ -10,7 +10,7 @@ import { convert_query } from "@/utils/helper"
const query_schema = z.object({
type: z.string(),
field: z.optional(z.string()),
term: z.optional(z.string()),
term: z.optional(z.union([z.string(), z.number(), z.nan()])),
limit: z.optional(z.number()),
filter: z.optional(zu.stringToJSON())
})
Expand Down Expand Up @@ -75,4 +75,4 @@ export async function GET(req: NextRequest) {
return NextResponse.json(error, { status: 400 })
}

}
}
167 changes: 133 additions & 34 deletions components/TermAndGeneSearch/network_table.tsx
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Original file line number Diff line number Diff line change
Expand Up @@ -7,6 +7,7 @@ import { DataGrid, GridToolbar, GridColDef } from "@mui/x-data-grid";
import { UISchema } from "@/app/api/schema/route";
import { NetworkSchema } from "@/app/api/knowledge_graph/route";
import { CustomToolbar } from "../Enrichment/NetworkTable";

const NetworkTable = ({data, schema}: {data: NetworkSchema, schema: UISchema}) => {
const [processedData, setProcessedData] = useState<{
[key:string]: {
Expand All @@ -15,40 +16,142 @@ const NetworkTable = ({data, schema}: {data: NetworkSchema, schema: UISchema}) =
columnVisibilityModel: {[key: string]: boolean}
}
} | null>(null)
// const [mapper, setMapper] = useState({})
const tableRef = useRef(null)
const [tab, setTab] = useState<null | string>(null)
const [tabs, setTabs] = useState<Array<string>>(null)
const display = {}

// Separate display configs for nodes and edges
const nodeDisplay = {}
const edgeDisplay = {}

for (const i of schema.nodes) {
display[i.node] = i.display
nodeDisplay[i.node] = i.display
}
for (const i of schema.edges) {
for (const m of i.match) {
display[m] = i.display
edgeDisplay[m] = i.display
}
}

useEffect(()=>{
if (data) {
const processed = {}
const id_mapper = {}
const node_tabs = []
const edge_tabs = []
for (const d of [...data.nodes, ...data.edges]) {

// Process nodes first
for (const d of data.nodes) {
const properties = d.data
const {kind, relation, source, target, label, "Unnamed: 0": _, ...rest} = d.data
const {kind, relation, source, target, label, ...rest} = d.data
const key = `node_${kind}`

if (kind && typeof kind === 'string') {
if (processed[key] === undefined) {
node_tabs.push(key)
processed[key] = {header: [], data: {}, columnVisibilityModel: {}}
const header = []
const columnVisibilityModel = {}

if (nodeDisplay[kind]) {
for (const prop of nodeDisplay[kind]) {
const field = prop.label
columnVisibilityModel[field] = !(prop.hide)
if (prop.type === "link") {
header.push({
field,
headerName: field,
flex: 1,
style: {flexDirection: "row"},
align: "left",
text: prop.text,
href: prop.href,
renderCell: ({row, field})=>{
return <Button href={row[field].href}>{row[field].text}</Button>
},
count: 0
})
} else {
header.push({
field,
headerName: field,
flex: 1,
style: {flexDirection: "row"},
align: "left",
text: prop.text,
count: 0
})
}
}
} else {
header.push({
field: 'label',
headerName: "Label",
flex: 1,
style: {flexDirection: "row"},
align: "left",
type: "node",
})
for (const field of Object.keys(rest)) {
const headerName = field.replaceAll(".", " ")
header.push({
field,
headerName: headerName.charAt(0).toUpperCase() + headerName.slice(1),
style: {flexDirection: "row"},
align: "left",
type: "node",
count: 0
})
}
}
processed[key].header = header
processed[key].columnVisibilityModel = columnVisibilityModel
}

// Process node data
if (processed[key].data[properties.id] === undefined) {
processed[key].data[properties.id] = {id: properties.id}
}
for (const i of processed[key].header) {
if (i.href) {
const val = makeTemplate(i.text, properties)
const href = makeTemplate(i.href, properties)
processed[key].data[properties.id][i.field] = {
text: val === "undefined" ? "": val,
href: href === "undefined" ? "": href
}
if (val !== "undefined") {
i.count = i.count + 1
}
} else {
const val = makeTemplate(i.text, properties)
processed[key].data[properties.id][i.field] = val === "undefined" ? "": precise(val)
if (val !== "undefined") {
i.count = i.count + 1
}
}
}
if (processed[key].data[properties.id]["label"] === "") {
processed[key].data[properties.id]["label"] = label
}
}
}

// Process edges
for (const d of data.edges) {
const properties = d.data
const {kind, relation, source, target, label, ...rest} = d.data
if (properties.id === undefined) properties.id = `${source}_${target}`
const key = relation || kind
if (key && typeof key === 'string') {
if ( processed[key] === undefined) {
if (relation) edge_tabs.push(key)
else node_tabs.push(key)
const key = `edge_${relation}`

if (relation && typeof relation === 'string') {
if (processed[key] === undefined) {
edge_tabs.push(key)
processed[key] = {header: [], data: {}, columnVisibilityModel: {}}
const header = []
const columnVisibilityModel = {}
if (display[key]) {
for (const prop of display[key]) {

if (edgeDisplay[relation]) {
for (const prop of edgeDisplay[relation]) {
const field = prop.label
columnVisibilityModel[field] = !(prop.hide)
if (prop.type === "link") {
Expand All @@ -65,7 +168,6 @@ const NetworkTable = ({data, schema}: {data: NetworkSchema, schema: UISchema}) =
},
count: 0
})

} else {
header.push({
field,
Expand All @@ -78,41 +180,32 @@ const NetworkTable = ({data, schema}: {data: NetworkSchema, schema: UISchema}) =
})
}
}
} else if (typeof properties.id === 'string') {
const {id, symbol, ref, ...rest} = properties
id_mapper[id] = label
// header.push({
// field: 'id',
// headerName: "ID",
// flex: 1,
// style: {flexDirection: "row"},
// align: "left",
// type: relation ? "edge": "node",
// })
} else {
header.push({
field: 'label',
headerName: "Label",
flex: 1,
style: {flexDirection: "row"},
align: "left",
type: relation ? "edge": "node",
type: "edge",
})
for (const field of Object.keys(rest)) {
const headerName = field.replaceAll(".", " ")
header.push({
field,
headerName: headerName.charAt(0).toUpperCase() + headerName.slice(1),
// flex: 1,
style: {flexDirection: "row"},
align: "left",
type: relation ? "edge": "node",
type: "edge",
count: 0
})
}
}
processed[key].header = header
processed[key].columnVisibilityModel = columnVisibilityModel
}

// Process edge data
if (processed[key].data[properties.id] === undefined) {
processed[key].data[properties.id] = {id: properties.id}
}
Expand All @@ -135,15 +228,18 @@ const NetworkTable = ({data, schema}: {data: NetworkSchema, schema: UISchema}) =
}
}
}
if (processed[key].data[properties.id]["label"] === "") processed[key].data[properties.id]["label"] = label
}
if (processed[key].data[properties.id]["label"] === "") {
processed[key].data[properties.id]["label"] = label
}
}
}
// setMapper(id_mapper)

setTabs([...node_tabs, ...edge_tabs])
setTab(node_tabs[0])
setProcessedData(processed)
}
}, [data])

if (processedData === null) return null
else {
const {data={}, header=[], columnVisibilityModel} = processedData[tab] || {}
Expand All @@ -159,9 +255,12 @@ const NetworkTable = ({data, schema}: {data: NetworkSchema, schema: UISchema}) =
scrollButtons="auto"
onChange={(e, val)=>setTab(val)}
aria-label="tab"
sx={{
'& .MuiTab-root.Mui-selected': {color: '#336699',}
}}
>
{tabs.map(k=>(
<Tab value={k} aria-label="left aligned" key={`tab-${k}`} label={k}/>
<Tab value={k} aria-label="left aligned" key={`tab-${k}`} label={k.replace('node_', '').replace('edge_', '') + (k.startsWith('node_') ? ' nodes' : ' edges')}/>
))}
</Tabs>
</Grid>
Expand Down Expand Up @@ -202,4 +301,4 @@ const NetworkTable = ({data, schema}: {data: NetworkSchema, schema: UISchema}) =
}
}

export default NetworkTable
export default NetworkTable