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DWI metadata fixes for master #2266

DWI metadata fixes for master

DWI metadata fixes for master #2266

Workflow file for this run

name: checks
on:
pull_request:
types: [opened, synchronize]
branches: [ master, dev ]
merge_group:
types: [checks_requested]
branches: [ master ]
jobs:
linux-clang-build:
runs-on: ubuntu-latest
env:
CFLAGS: -Werror
QT_SELECT: qt5
steps:
- uses: actions/checkout@v1
- name: install dependencies
run: |
sudo apt-get update
sudo apt-get install clang libqt5opengl5-dev libqt5svg5-dev libglvnd-dev libeigen3-dev zlib1g-dev libfftw3-dev python3-distutils
- name: configure
run: ./configure -assert || { cat configure.log; false; }
- name: build
run: ./build -nowarnings -persistent -nopaginate || { cat build.log; false; }
- name: unit tests
run: ./run_tests units || { cat testing_units.log; false; }
- name: binary tests
run: ./run_tests binaries || { cat testing_binaries.log; false; }
- name: check command documentation
run: ./docs/generate_user_docs.sh && git diff --exit-code docs/
linux-gcc-build:
runs-on: ubuntu-latest
env:
CXX: g++-9
CFLAGS: -Werror
QT_SELECT: qt5
steps:
- uses: actions/checkout@v1
- name: install dependencies
run: |
sudo apt-get update
sudo apt-get install g++-9 libqt5opengl5-dev libqt5svg5-dev libglvnd-dev libeigen3-dev zlib1g-dev libfftw3-dev
- name: configure
run: ./configure -nooptim || { cat configure.log; false; }
- name: build
run: ./build -nowarnings -persistent -nopaginate || { cat build.log; false; }
macos-build:
runs-on: macos-latest
env:
CFLAGS: -Werror
PACKAGES: "qt5 eigen pkg-config fftw libpng"
steps:
- uses: actions/checkout@v1
- name: install dependencies
run: |
brew update || brew update # https://github.com/Homebrew/brew/issues/2491#issuecomment-294207661
brew install $PACKAGES || brew install $PACKAGES
brew link --force qt5
- name: configure
run: ./configure -assert || { cat configure.log; false; }
- name: build
run: ./build -nowarnings -persistent -nopaginate || { cat build.log; false; }
- name: unit tests
run: ./run_tests units || { cat testing_units.log; false; }
- name: binary tests
run: ./run_tests binaries || { cat testing_binaries.log; false; }
windows-build:
runs-on: windows-latest
env:
CFLAGS: -Werror
MSYSTEM: MINGW64
MSYSCON: defterm
CHERE_INVOKING: enabled_from_arguments
MSYS2_NOSTART: yes
steps:
- uses: actions/checkout@v1
- name: fetch and install MSYS2
run: bash -c 'curl -sL https://github.com/MRtrix3/MinGW/releases/download/1.0/msys2.tar.{0,1} | tar xf -'
- name: run qtbinpatcher
shell: cmd
run: msys64\msys2_shell.cmd -c "qtbinpatcher --qt-dir=$(dirname $(which qmake))"
- name: configure
shell: cmd
run: msys64\msys2_shell.cmd -c "./configure -assert || { cat configure.log; false; }"
- name: build
shell: cmd
run: msys64\msys2_shell.cmd -c "./build -nowarnings -persistent -nopaginate || { cat build.log; false; }"
- name: unit tests
shell: cmd
run: msys64\msys2_shell.cmd -c "./run_tests units || { cat testing_units.log; false; }"
- name: binary tests
shell: cmd
run: msys64\msys2_shell.cmd -c "./run_tests binaries || { cat testing_binaries.log; false; }"
secondary-checks:
runs-on: ubuntu-latest
env:
QT_SELECT: qt5
steps:
- uses: actions/checkout@v1
- name: install dependencies
run: |
sudo apt-get update
sudo apt-get install pylint python3-sphinx sphinx-rtd-theme-common python3-recommonmark python3-sphinx-rtd-theme python3-pip
pip3 install sphinx-notfound-page
- name: check syntax
run: ./check_syntax || { cat syntax.log; false; }
- name: pylint (Python 3)
run: |
echo "__version__ = 'pylint testing' #pylint: disable=unused-variable" > ./lib/mrtrix3/_version.py
PYTHON=python3 ./run_pylint || { cat pylint.log; false; }
- name: check copyright headers
run: ./update_copyright && git diff --exit-code
- name: check building of documentation
run: python3 -m sphinx -n -N -W -w sphinx.log docs/ tmp/
- name: install build dependencies
run: sudo apt-get install python2 clang libqt5opengl5-dev libqt5svg5-dev libglvnd-dev libeigen3-dev zlib1g-dev libfftw3-dev
- name: check configure with Python 2
run: python2 ./configure || { cat configure.log; false; }
- name: check build with Python 2
run: python2 ./build -dryrun || { cat build.log; false; }
- name: check configure with Python 3
run: python3 ./configure || { cat configure.log; false; }
- name: check build with Python 3
run: python3 ./build -dryrun || { cat build.log; false; }