Code

1D analysis#159

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iancze merged 125 commits intomainMPoL-dev/MPoL:mainfrom one_dimMPoL-dev/MPoL:one_dimCopy head branch name to clipboardNov 3, 2023

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Commits on Feb 20, 2023

• CrossValidate: add model to self

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• CrossValidate: rename var

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• add onedim.py, func to get 1d vis fit

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• add 1d radial profile func

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• get_radial_profile: simplify args

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• typos

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• add deproject_vis routine

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• setup.py: add new type of EXTRA, with frank

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• get_radial_profile: add comments, stage deprojec.

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• get_1d_vis_fit: stage vis deprojection

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Commits on Feb 21, 2023

• move frank import internal to func

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• get_radial_profile: bug fix (norm radial profile)

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• Merge branch 'main' into one_dim

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• deproject_vis: add TODO

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Commits on Feb 22, 2023

• typo

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• get_1d_vis_fit: only intake model

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• Merge branch 'main' into one_dim

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• setup.py: copy/paste typo

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• CrossValidate: hold off on hyperpar changes

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Commits on Feb 24, 2023

• Merge branch 'main' into one_dim

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• fold deproject_vis into get_1d_vis_fit

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• get_radial_profile: clean up docstring

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• get_radial_profile: convert to rad

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• get_radial_profile: add 'geom' arg

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• get_radial_profile: incorporate image deprojection

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• get_1d_vis_fit: update args, docstring

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• get_1d_vis_fit: get model u, v, V

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• get_1d_vis_fit: deproject vis with frank

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• get_1d_vis_fit: get radial vis profile

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• get_radial_profile: simplify

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Commits on Feb 28, 2023

• get_radial_profile: simplify

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Commits on Mar 13, 2023

• get_1d_vis_fit debugged

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• flat_to_observer, observer_to_flat: opt_thick arg

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• mypy: add frank ignore

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• Merge branch 'main' into one_dim

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• revert opt_thick geometry arg

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• typos

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Commits on Mar 22, 2023

• Merge branch 'main' into one_dim

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• docstring spacing

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Commits on Mar 30, 2023

• get_1d_vis_fit: intake vis and coords, not model

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• get_1d_vis_profile: rename

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• get_1d_image_profile: rename

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• get_1d_image_profile: intake image and coords

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• get_1d_image_profile: add flux rescaling

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• Merge branch 'main' into one_dim

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Commits on Apr 4, 2023

• Merge branch 'main' into one_dim

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Commits on Jun 22, 2023

• get_1d_vis_profile: explicit deproject

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Commits on Oct 17, 2023

• Merge branch 'one_dim' of https://github.com/MPoL-dev/MPoL into one_dim

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• Merge branch 'main' into one_dim

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• Merge branch 'main' into one_dim

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• Merge branch 'one_dim' of https://github.com/MPoL-dev/MPoL into one_dim

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• blank space

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• create 1d tests file

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• rename 1d vis profile func

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• radialV: force specify rescale_flux

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• rename 1d brightness profile func

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• radialI: force specify rescale_flux

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• radialI: simplify

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Commits on Oct 19, 2023

• remove reimplemented func

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• radialI: add TODO checks

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• start of onedim tests

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Commits on Oct 27, 2023

• radialI: remove 'rescale_flux'

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• radialI: var disambiguation

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• radialI: custom deprojection

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• radialI: more precise comments

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• radialI: sensible default bins

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• radialI: mask empty bins

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• radialV: replicate radialI layout

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• radialV: mask empty bins

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• radialI: more general bin guess

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Commits on Oct 31, 2023

• radialI: set bin guess

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• Merge branch 'one_dim' of https://github.com/MPoL-dev/MPoL into one_dim

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• Merge branch 'zenodo_relocate' of https://github.com/MPoL-dev/MPoL into one_dim

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• add pytest fixtures for mock 1d dataset

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• add utility function to center a numpy image

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• add utility function to convert np to ImageCube

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• move np to ImageCube out of utils

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• Move np to ImageCube into images.py

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• np__to_imagecube: add import

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Commits on Nov 1, 2023

• Merge branch 'numpy_image_helper_funcs' of https://github.com/MPoL-dev/MPoL into one_dim

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• add processing steps to mock_1d_image_models

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• mock 1d data: new filename

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• simplify mock_1d_image_model fixture

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• simplify onedim_test design

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• implement test of radialI

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• add diag plot to test_radialI

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• test_radialI: save diag fig

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• test_radialI: add plot ax labels

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• test_radialI: set bins

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• radialV: less conservative step size

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• mock_1d_image_model test fixture: clarify naming

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• add mock_1d_vis_model test fixture

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• remove unneeded func

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• test_radialI: update test points

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• test_radialV: add test assert

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• test_radialV: add plot

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• Merge branch 'zenodo_record_ref' of https://github.com/MPoL-dev/MPoL into one_dim

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• mock_1d_archive: update zenodo record ref

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• test_radialI: consistent naming

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• onedim_test: set geom

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• add frank as test dep

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• tests.yml: add frank to dep installs

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• extra_requires: remove frank version restriction

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• typo

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Commits on Nov 2, 2023

• test_radialI: clean up diag plot

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• test_radialV: clean up diag plot

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• remove unneeded func

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• Merge branch 'main' of https://github.com/MPoL-dev/MPoL into one_dim

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Commits on Nov 3, 2023

• conftest: recast 'geom' type

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• mock_1d_image_model: undo image centering

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• mock_1d_image_model: place image in cube

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• mock_1d_image_model: update outputs

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• mock_1d_vis_model: create fourier cube

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• mock_1d_vis_model: put vis in ground_cube

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• mock_1d_vis_model: update outputs

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• radialI: change input from array to icube

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• radialI: add chan arg

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• radialI: update calls to icube

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• radialV: change input to fcube

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• radialV: add chan arg

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• radialV: use fcube

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• test_radialI: update data retrieval call

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• test_radialV: update data retrieval call

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• test_radialI: use icube

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• test_radialV: use fcube

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