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@TCLamnidis TCLamnidis released this 30 Jan 17:08
· 116 commits to main since this release
1.1.2
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Learn about vigilant mode.

[1.1.2] - 02/01/2023

Added

  • Add -a option to run_Eager.sh to create a text file with the run commands for launching Autorun_eager, for submission as a qsub array.
  • Add array submission script.
  • Add script to create and update poseidon packages from eager output.
    • Includes script to collate eager results and overwrite the janno of a poseidon pacakge.
    • Includes script to update poseidon indFile from janno files.
    • Each poseidon package contains a file named AE_version.txt with the version used for the last package creation/update.
  • Added conda environment yaml file autoeager_env.yml

Fixed

  • Fixed pull request template.
  • Fixed a bug where sequencing runs were considered updated if the Results.txt was updated without changing the data. Now only changes to the output bams constitute an update trigger.
  • Fixed a bug where TSV creation would try to match the sequencing ID to the sequencing batch ID, instead of the run ID.

Dependencies

Deprecated

Assets 2
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