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Testing infra

Testing infra #7

Workflow file for this run

name: project tests
on:
pull_request:
types:
- opened
- reopened
- synchronize
- ready_for_review
push:
branches:
- main
jobs:
projectchanges:
runs-on: ubuntu-latest
outputs:
projects: ${{ steps.filter.outputs.projectchanges }}
steps:
- uses: actions/checkout@v2
- uses: dorny/paths-filter@v2
id: filter
with:
filters: .github/project-filters.yaml
if: github.event.pull_request.draft == false
# second job takes those outputs and runs
# unit tests on these libs and projects
tests:
runs-on: ubuntu-latest
needs: projectchanges
strategy:
fail-fast: false # is this desired behavior here?
matrix:
project: ${{ fromJSON(needs.projectchanges.outputs.projects) }}
exclude:
# don't run non-existent .github/workflow tests,
# and exclude projects, whose tests are run in
# a different CI script
- project: 'workflow'
permissions:
packages: read
container:
image: quay.io/singularity/singularity:v3.8.1
options: --privileged
steps:
- name: Checkout repository
uses: actions/checkout@v4
with:
submodules: recursive
- name: Build Apptainer image
run: |
cd projects/${{ matrix.project }}
apptainer build --fakeroot ${matrix.project}.sif apptainer.def
- name: Run tests in Apptainer container
run: |
cd projects/${{ matrix.project }}
apptainer exec --fakeroot ${matrix.project}.sif poetry run pytest