Bimodularity Framework

Code to replicate analyses and figures of REF & LINK TO PAPER.

Requirements

Data

C. elegans data can be accessed on WormAtlas.org under "Neuronal Connectivity II: by L.R. Varshney, B.L. Chen, E. Paniagua, D.H. Hall and D.B. Chklovskii" (see Varshney et al., 2011 for more information).

Python 3+

• Numpy
• Matplotlib
• Networkx
• Scikit-Learn

Usage

The Bimodularity-Figures.ipynb notebook:

• generates the canonical graphs,
• loads the C. elegans data,
• computes the bimodularity analyses,
• and creates all the figures in the article.

The Bimodularity-Supplementary.ipynb notebook:

• creates all the supplementary figures in the article.

Both notebooks are self-sufficient and should run when using the run all command.