deploy: f134cbd

_sources/content/00_Download_Data.ipynb

@@ -2,7 +2,7 @@
  "cells": [
   {
    "cell_type": "markdown",
-   "id": "b4ce3fa7",
+   "id": "04cd60fb",
    "metadata": {},
    "source": [
     "# Download Data\n",
@@ -40,7 +40,7 @@
   {
    "cell_type": "code",
    "execution_count": 1,
-   "id": "cbea34c9",
+   "id": "3bdffec4",
    "metadata": {},
    "outputs": [
     {
@@ -63,125 +63,153 @@
      "text": [
       "Downloading...\n",
       "From (original): https://drive.google.com/uc?id=1SVPP1vd2UobKf1djztpi-DcYAFOFXQtF\n",
-      "From (redirected): https://drive.google.com/uc?id=1SVPP1vd2UobKf1djztpi-DcYAFOFXQtF&confirm=t&uuid=e78f3b14-c2b9-43e3-8b80-44b7783fb200\n",
+      "From (redirected): https://drive.google.com/uc?id=1SVPP1vd2UobKf1djztpi-DcYAFOFXQtF&confirm=t&uuid=8637d514-1572-4ca7-a08d-a97384b36b36\n",
       "To: /home/runner/work/multi-echo-data-analysis/multi-echo-data-analysis/data/multi-echo-data-analysis/sub-04570.zip\n",
       "\r",
-      "  0%|          | 0.00/315M [00:00<?, ?B/s]"
+      "  0%|          | 0.00/315M [00:00<?, ?B/s]\r",
+      "  0%|          | 524k/315M [00:00<01:08, 4.61MB/s]"
      ]
     },
     {
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      "output_type": "stream",
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+     ]
+    },
+    {
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+     ]
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     {

_sources/content/01_Optimal_Combination_with_t2smap.ipynb

@@ -2,7 +2,7 @@
  "cells": [
   {
    "cell_type": "markdown",
-   "id": "d81205f0",
+   "id": "9b33c331",
    "metadata": {},
    "source": [
     "# Optimal combination with `t2smap`\n",
@@ -13,7 +13,7 @@
   {
    "cell_type": "code",
    "execution_count": 1,
-   "id": "fbcef229",
+   "id": "d24fe02c",
    "metadata": {},
    "outputs": [
     {
@@ -54,7 +54,7 @@
   {
    "cell_type": "code",
    "execution_count": 2,
-   "id": "eafaab95",
+   "id": "46d2f5fc",
    "metadata": {},
    "outputs": [],
    "source": [
@@ -91,7 +91,7 @@
   {
    "cell_type": "code",
    "execution_count": 3,
-   "id": "05471980",
+   "id": "c208c36c",
    "metadata": {},
    "outputs": [
     {
@@ -158,7 +158,7 @@
   {
    "cell_type": "code",
    "execution_count": 4,
-   "id": "3056025f",
+   "id": "7eb38e1f",
    "metadata": {},
    "outputs": [
     {
@@ -184,7 +184,7 @@
   {
    "cell_type": "code",
    "execution_count": 5,
-   "id": "836a60bd",
+   "id": "e379455d",
    "metadata": {},
    "outputs": [],
    "source": [
@@ -202,7 +202,7 @@
   },
   {
    "cell_type": "markdown",
-   "id": "bff9133c",
+   "id": "21316803",
    "metadata": {},
    "source": [
     "```{glue:figure} figure_t2starmap\n",
@@ -216,7 +216,7 @@
   {
    "cell_type": "code",
    "execution_count": 6,
-   "id": "296a9cbd",
+   "id": "15e92dfb",
    "metadata": {},
    "outputs": [],
    "source": [
@@ -234,7 +234,7 @@
   },
   {
    "cell_type": "markdown",
-   "id": "b37ae12f",
+   "id": "2dafb09a",
    "metadata": {},
    "source": [
     "```{glue:figure} figure_s0map\n",
@@ -248,7 +248,7 @@
   {
    "cell_type": "code",
    "execution_count": 7,
-   "id": "fe2f03d7",
+   "id": "5d28e78d",
    "metadata": {},
    "outputs": [],
    "source": [
@@ -307,7 +307,7 @@
   },
   {
    "cell_type": "markdown",
-   "id": "654c53b0",
+   "id": "a664ed2f",
    "metadata": {},
    "source": [
     "```{glue:figure} figure_t2smap_epi_plots\n",
@@ -321,7 +321,7 @@
   {
    "cell_type": "code",
    "execution_count": 8,
-   "id": "171ff531",
+   "id": "0e8d6527",
    "metadata": {},
    "outputs": [
     {
@@ -385,7 +385,7 @@
   },
   {
    "cell_type": "markdown",
-   "id": "e0d7af5c",
+   "id": "227e5adf",
    "metadata": {},
    "source": [
     "```{glue:figure} figure_t2smap_t2snr\n",
@@ -399,7 +399,7 @@
   {
    "cell_type": "code",
    "execution_count": 9,
-   "id": "055d6435",
+   "id": "4f300903",
    "metadata": {},
    "outputs": [],
    "source": [
@@ -414,7 +414,7 @@
   },
   {
    "cell_type": "markdown",
-   "id": "f6c3791e",
+   "id": "3d0d7b23",
    "metadata": {},
    "source": [
     "```{glue:figure} figure_echo2_carpet\n",
@@ -428,7 +428,7 @@
   {
    "cell_type": "code",
    "execution_count": 10,
-   "id": "8f6edd3b",
+   "id": "4c4cbaeb",
    "metadata": {},
    "outputs": [],
    "source": [
@@ -442,7 +442,7 @@
   },
   {
    "cell_type": "markdown",
-   "id": "afae6c6c",
+   "id": "2e1a8ec2",
    "metadata": {},
    "source": [
     "```{glue:figure} figure_optcom_carpet\n",