nop

inst/Makefile

@@ -22,23 +22,20 @@ invariance-example:
 	(cd .. && R --vanilla < inst/code/invariance-example.R &)
 
 sim-correct:
-	(cd .. && Rscript --vanilla inst/code/run-simulation.R 1 20 20 300 0 $(ROW))
+	(cd .. && Rscript --vanilla inst/code/run-simulation.R 1 10 10 300 0 $(ROW))
 
 sim-link:
-	(cd .. && Rscript --vanilla inst/code/run-simulation.R 2 20 20 300 0 $(ROW))
+	(cd .. && Rscript --vanilla inst/code/run-simulation.R 2 10 10 300 0 $(ROW))
 
 sim-hidden:
-	(cd .. && Rscript --vanilla inst/code/run-simulation.R 3 20 20 300 0 $(ROW))
+	(cd .. && Rscript --vanilla inst/code/run-simulation.R 3 10 10 300 0 $(ROW))
 
 sim-roc:
-	(cd .. && Rscript --vanilla inst/code/run-simulation.R 4 20 20 300 0 $(ROW))
+	(cd .. && Rscript --vanilla inst/code/run-simulation.R 4 10 10 300 0 $(ROW))
 
 sim-test:
 	(cd .. && Rscript --vanilla inst/code/run-simulation.R 1 2 2 2 1 $(ROW))
 
-sim-gcm:
-	(cd .. && Rscript --vanilla inst/code/run-simulation.R 1 20 4 100 1 $(ROW))
-
 sim-all: sim-correct sim-link sim-hidden sim-roc
 
 vis-main:
@@ -64,16 +61,16 @@ count:
 	ls test.* | wc
 
 correct:
-	bash dispatch.sh 12000 run-correct.sh
+	bash dispatch.sh 9600 run-correct.sh
 
 hidden:
-	bash dispatch.sh 12000 run-hidden.sh
+	bash dispatch.sh 9600 run-hidden.sh
 
 link:
-	bash dispatch.sh 12000 run-link.sh
+	bash dispatch.sh 9600 run-link.sh
 
 roc:
-	bash dispatch.sh 1500 run-roc.sh
+	bash dispatch.sh 1200 run-roc.sh
 
 test:
 	bash dispatch.sh 2 run-test.sh

inst/code/run-simulation.R

@@ -58,7 +58,7 @@ if (spec == "roc") {
 }
 
 # Params
-ns <- c(1e2, 3e2, 1e3, 3e3, 1e4) # Sample sizes
+ns <- c(1e2, 3e2, 1e3, 3e3) # , 1e4) # Sample sizes
 blfix <- TRUE # fixed baseline transformation
 nanc <- 3 # ancestors of Y
 panc <- 0.8 # edge probability