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1. pysb pysb Public

   Forked from pysb/pysb

   Python framework for Systems Biology modeling [Lopez Lab Mods]

   Python 6 8

2. PyDREAM PyDREAM Public

   MT-DREAM(ZS) algorithm for model optimization, calibration, selection

   Python 52 33

3. PyBILT PyBILT Public

   Toolkit to aid in the analysis of lipid bilayer molecular simulation trajectories.

   Python 25 9

4. simplePSO simplePSO Public

   Particle Swarm Optimization algorithm in Python

   Python 13 4

5. MAGINE MAGINE Public

   Mechanism of Action Generation involving Network Analysis

   Jupyter Notebook 9 5

6. pyvipr pyvipr Public

   Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML

   Jupyter Notebook 27 4