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Check that the mean file is actually deleted
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lcolladotor committed May 21, 2024
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Expand Up @@ -756,6 +756,7 @@ length(regions)
## Remove file we no longer need
unlink("SRP045638/bw", recursive = TRUE)
stopifnot(!file.exists("SRP045638/bw/mean_SRP045638.bw"))
```

Now that we have a set of regions to work with, we proceed to build a _RangedSummarizedExperiment_ object with the coverage counts, add the expanded metadata we built for the gene-level, and scale the counts. Note that `coverage_matrix()` scales the base-pair coverage counts by default, which we turn off in order to use use `scale_counts()`.
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