Install GitHub version of recount for now, given that it's not availa… #40
lcolladotorcheck-bioc.yml
on: push
Matrix: build-check
docker-build-and-push
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Annotations
11 errors and 31 warnings
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macOS-latest (4.4)
Failed to install 'recountWorkflow' from local:
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macOS-latest (4.4)
Process completed with exit code 1.
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macOS-latest (4.4)
Failed to install 'unknown package' from GitHub:
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macOS-latest (4.4)
Process completed with exit code 1.
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macOS-latest (4.4)
No such keg: /opt/homebrew/Cellar/r
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windows-latest (4.4)
Failed to install 'recountWorkflow' from local:
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windows-latest (4.4)
Process completed with exit code 1.
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windows-latest (4.4)
Failed to install 'unknown package' from GitHub:
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windows-latest (4.4)
Process completed with exit code 1.
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ubuntu-latest (4.4)
Process completed with exit code 1.
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ubuntu-latest (4.4)
Process completed with exit code 1.
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macOS-latest (4.4)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, actions/cache@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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macOS-latest (4.4)
No files were found with the provided path: check. No artifacts will be uploaded.
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macOS-latest (4.4)
unable to access index for repository https://bioconductor.org/packages/3.18/bioc/bin/macosx/big-sur-arm64/contrib/4.4:
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macOS-latest (4.4)
unable to access index for repository https://bioconductor.org/packages/3.18/data/annotation/bin/macosx/big-sur-arm64/contrib/4.4:
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macOS-latest (4.4)
unable to access index for repository https://bioconductor.org/packages/3.18/data/experiment/bin/macosx/big-sur-arm64/contrib/4.4:
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macOS-latest (4.4)
unable to access index for repository https://bioconductor.org/packages/3.18/workflows/bin/macosx/big-sur-arm64/contrib/4.4:
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macOS-latest (4.4)
unable to access index for repository https://bioconductor.org/packages/3.18/books/bin/macosx/big-sur-arm64/contrib/4.4:
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macOS-latest (4.4)
unable to access index for repository https://bioconductor.org/packages/3.18/bioc/bin/macosx/big-sur-arm64/contrib/4.4:
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macOS-latest (4.4)
unable to access index for repository https://bioconductor.org/packages/3.18/data/annotation/bin/macosx/big-sur-arm64/contrib/4.4:
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macOS-latest (4.4)
unable to access index for repository https://bioconductor.org/packages/3.18/data/experiment/bin/macosx/big-sur-arm64/contrib/4.4:
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macOS-latest (4.4)
unable to access index for repository https://bioconductor.org/packages/3.18/workflows/bin/macosx/big-sur-arm64/contrib/4.4:
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macOS-latest (4.4)
unable to access index for repository https://bioconductor.org/packages/3.18/books/bin/macosx/big-sur-arm64/contrib/4.4:
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macOS-latest (4.4)
pkg-config 0.29.2_3 is already installed and up-to-date.
To reinstall 0.29.2_3, run:
brew reinstall pkg-config
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macOS-latest (4.4)
HOMEBREW_NO_INSTALLED_DEPENDENTS_CHECK is set: not checking for outdated
dependents or dependents with broken linkage!
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macOS-latest (4.4)
harfbuzz 8.4.0 is already installed and up-to-date.
To reinstall 8.4.0, run:
brew reinstall harfbuzz
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macOS-latest (4.4)
macOS's Gatekeeper has been disabled for this Cask
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windows-latest (4.4)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, actions/cache@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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windows-latest (4.4)
unable to access index for repository https://bioconductor.org/packages/3.18/bioc/bin/windows/contrib/4.4:
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windows-latest (4.4)
unable to access index for repository https://bioconductor.org/packages/3.18/data/annotation/bin/windows/contrib/4.4:
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windows-latest (4.4)
unable to access index for repository https://bioconductor.org/packages/3.18/data/experiment/bin/windows/contrib/4.4:
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windows-latest (4.4)
unable to access index for repository https://bioconductor.org/packages/3.18/workflows/bin/windows/contrib/4.4:
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windows-latest (4.4)
unable to access index for repository https://bioconductor.org/packages/3.18/books/bin/windows/contrib/4.4:
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windows-latest (4.4)
unable to access index for repository https://bioconductor.org/packages/3.18/bioc/bin/windows/contrib/4.4:
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windows-latest (4.4)
unable to access index for repository https://bioconductor.org/packages/3.18/data/annotation/bin/windows/contrib/4.4:
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windows-latest (4.4)
unable to access index for repository https://bioconductor.org/packages/3.18/data/experiment/bin/windows/contrib/4.4:
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windows-latest (4.4)
unable to access index for repository https://bioconductor.org/packages/3.18/workflows/bin/windows/contrib/4.4:
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windows-latest (4.4)
unable to access index for repository https://bioconductor.org/packages/3.18/books/bin/windows/contrib/4.4:
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windows-latest (4.4)
No files were found with the provided path: check. No artifacts will be uploaded.
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ubuntu-latest (4.4)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, actions/cache@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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ubuntu-latest (4.4)
You are running out of disk space. The runner will stop working when the machine runs out of disk space. Free space left: 20 MB
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ubuntu-latest (4.4)
No files were found with the provided path: check. No artifacts will be uploaded.
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