Add source-related files for paste 1.3.0

paste/1.3.0/.gitignore

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+paste*
+v1.3.0.tar.gz

paste/1.3.0/README.md

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+# Installation
+
+```bash
+## Commands used for installing the software
+
+#   Installed on caracol, the GPU node
+
+#   Make sure not to rely on user packages
+export PYTHONNOUSERSITE="not_a_real_path"
+
+module load python/3.8.3
+python -m venv ./paste_venv
+source ./paste_venv/bin/activate
+
+#  Upgrade pip and install CUDA-aware pytorch
+python -m pip install --upgrade pip
+python -m pip install torch==1.11.0+cu113 -f https://download.pytorch.org/whl/torch_stable.html
+
+wget https://github.com/raphael-group/paste/archive/refs/tags/v1.3.0.tar.gz
+tar -xzf v1.3.0.tar.gz
+python -m pip install -r paste-1.3.0/requirements.txt
+python -m pip install paste-bio
+
+## Ignore all downloaded/installed files
+echo paste* > .gitignore
+echo v1.3.0.tar.gz >> .gitignore
+
+# Set permissions (protect against accidental changes to virtual env)
+chmod -R 775 /jhpce/shared/jhpce/libd/paste
+chmod -R 555 /jhpce/shared/jhpce/libd/paste/1.3.0/paste_venv
+
+## Version control files
+git add .gitignore
+git add README.md
+```
+
+# Reproducibility
+
+```bash
+## Evaluate the following commands
+module list
+date
+echo "User: ${USER}"
+echo "Hostname: ${HOSTNAME}"
+```
+
+```bash
+## copy paste the output from the previous commands
+$ module list
+
+Currently Loaded Modules:
+  1) matlab/R2019a   3) JHPCE_tools/1.0   5) gcc/4.4.7                       7) JHPCE_CENTOS7_DEFAULT_ENV
+  2) stata/17        4) sge/8.1.9         6) COMMUNITY_CENTOS7_DEFAULT_ENV   8) python/3.8.3
+
+$ date
+Fri May 19 09:42:42 EDT 2023
+
+$ echo "User: ${USER}"
+User: neagles
+
+$ echo "Hostname: ${HOSTNAME}"
+Hostname: compute-126.cm.cluster
+```