initial commit - forking cardioception v0.5.0

.github/workflows/docs.yml

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+name: Build and Deploy
+
+on:
+  push:
+    branches:
+      - master
+  pull_request:
+    branches:
+      - master
+permissions:
+  contents: write
+
+jobs:
+  build-and-deploy:
+    runs-on: ubuntu-latest
+    steps:
+      - name: Checkout 🛎️
+        uses: actions/checkout@v3
+
+      - name: Set up Python 3.9
+        uses: actions/setup-python@v4
+        with:
+          python-version: "3.9"
+
+      - name: Build
+        run: |
+          pip install --upgrade pip
+          pip install psychopy==2020.1.2 --no-deps
+          pip install -r requirements-docs.txt
+          sudo apt-get install graphviz
+          sphinx-build -b html docs/source docs/build/html
+
+      - name: Deploy 🚀
+        uses: JamesIves/github-pages-deploy-action@v4
+        with:
+          folder: docs/build/html
+          BRANCH: gh-pages

.github/workflows/linting.yml

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+name: Linting
+
+on: [push, pull_request]
+
+jobs:
+  test:
+    runs-on: ubuntu-latest
+    strategy:
+      matrix:
+        python-version: [3.8]
+    steps:
+    - uses: actions/checkout@v2
+    - name: Set up Python ${{ matrix.python-version }}
+      uses: actions/setup-python@v2
+      with:
+        python-version: ${{ matrix.python-version }}
+    - uses: actions/cache@v2
+      name: Configure pip caching
+      with:
+        path: ~/.cache/pip
+        key: ${{ runner.os }}-pip-${{ hashFiles('**/setup.py') }}
+        restore-keys: |
+          ${{ runner.os }}-pip-
+    - name: Install dependencies
+      run: |
+        pip install isort flake8 black mypy
+        pip install types-setuptools
+    - name: Run tests and coverage
+      run: |
+        mypy ./cardioception/ --ignore-missing-imports
+        black ./cardioception/
+        isort ./cardioception/
+        flake8 ./cardioception/ --extend-ignore=E501

.github/workflows/pypi.yml

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+name: Publish Python 🐍 distributions 📦 to PyPI and TestPyPI
+
+on: push
+
+jobs:
+  build:
+    name: Build distribution 📦
+    runs-on: ubuntu-latest
+
+    steps:
+    - uses: actions/checkout@v4
+    - name: Set up Python
+      uses: actions/setup-python@v4
+      with:
+        python-version: "3.10"
+    - name: Install pypa/build
+      run: >-
+        python3 -m
+        pip install
+        build
+        --user
+    - name: Build a binary wheel and a source tarball
+      run: python3 -m build
+    - name: Store the distribution packages
+      uses: actions/upload-artifact@v3
+      with:
+        name: python-package-distributions
+        path: dist/
+
+  publish-to-pypi:
+    name: >-
+      Publish Python 🐍 distribution 📦 to PyPI
+    if: startsWith(github.ref, 'refs/tags/')  # only publish to PyPI on tag pushes
+    needs:
+    - build
+    runs-on: ubuntu-latest
+    environment:
+      name: pypi
+      url: https://pypi.org/p/cardioception
+    permissions:
+      id-token: write  # IMPORTANT: mandatory for trusted publishing
+    steps:
+      - name: Download all the dists
+        uses: actions/download-artifact@v3
+        with:
+          name: python-package-distributions
+          path: dist/
+      - name: Publish distribution 📦 to PyPI
+        uses: pypa/gh-action-pypi-publish@release/v1

.gitignore

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+.ipynb_checkpoints
+*.pyc
+.mypy_cache
+.pytest_cache
+/htmlcov
+/dist
+/cardioception.egg-info
+/build
+docs/source/auto_examples
+docs/source/generated
+docs/source/api
+docs/build
+docs/auto_examples
+.Rproj.user

.isort.cfg

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+[settings]
+known_third_party = numpy,pandas,papermill,pkg_resources,psychopy,serial,sphinx_bootstrap_theme,systole
+multi_line_output = 3
+include_trailing_comma = True
+force_grid_wrap = 0
+use_parentheses = True
+ensure_newline_before_comments = True
+line_length = 88

.pre-commit-config.yaml

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+repos:
+-   repo: https://github.com/pre-commit/mirrors-isort
+    rev: v5.10.1
+    hooks:
+    - id: isort
+      files: ^cardioception/
+-   repo: https://github.com/ambv/black
+    rev: 23.11.0
+    hooks:
+    - id: black
+      language_version: python3
+      files: ^cardioception/
+-   repo: https://github.com/pycqa/flake8
+    rev: 6.1.0
+    hooks:
+    - id: flake8
+      files: ^cardioception/
+      args: [--extend-ignore=E501]
+-   repo: https://github.com/pre-commit/mirrors-mypy
+    rev: 'v1.6.1'
+    hooks:
+    - id: mypy 
+      files: ^cardioception/
+      args: [--ignore-missing-imports, --follow-imports=skip]