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LegrandNico · Apr 2, 2024 · 0fc0a37 · 0fc0a37
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diff --git a/README.md b/README.md
@@ -169,17 +169,17 @@ You can also analyze the results in [Google Colab](https://colab.research.google
 
 | Notebook | Colab | nbViewer |
 | --- | ---| --- |
-| Heartbeat Counting task report | [![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/LegrandNico/Cardioception/blob/master/cardioception/notebooks/HeartBeatCounting.ipynb) | [![View the notebook](https://img.shields.io/badge/render-nbviewer-orange.svg)](https://nbviewer.jupyter.org/github/LegrandNico/Cardioception/blob/master/cardioception/notebooks/HeartBeatCounting.ipynb)
-| Heart Rate Discrimination task report | [![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/LegrandNico/Cardioception/blob/master/cardioception/notebooks/HeartRateDiscrimination.ipynb) | [![View the notebook](https://img.shields.io/badge/render-nbviewer-orange.svg)](https://nbviewer.jupyter.org/github/LegrandNico/Cardioception/blob/master/cardioception/notebooks/HeartRateDiscrimination.ipynb)
+| Heartbeat Counting task report | [![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/LegrandNico/cardioception-toolbox/blob/master/cardioception/notebooks/HeartBeatCounting.ipynb) | 
+| Heart Rate Discrimination task report | [![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/LegrandNico/cardioception-toolbox/blob/master/cardioception/notebooks/HeartRateDiscrimination.ipynb) | 
 
 ## Bayesian modeling
 
 More advanced subject and group-level Bayesian modelling approaches are described in the following notebooks.
 
 | Notebook | Colab | nbViewer |
 | --- | ---| --- |
-| Fitting the psychometric function (single subject) | [![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/LegrandNico/Cardioception/blob/master/docs/source/examples/psychophysics/1-psychophysics_subject_level.ipynb) |  [![View the notebook](https://img.shields.io/badge/render-nbviewer-orange.svg)](https://nbviewer.jupyter.org/github/LegrandNico/LegrandNico/Cardioception/blob/master/docs/source/examples/psychophysics/1-psychophysics_subject_level.ipynb)
-| Fitting the psychometric function (group level) | [![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/LegrandNico/Cardioception/blob/master/docs/source/examples/psychophysics/2-psychophysics_group_level.ipynb) |  [![View the notebook](https://img.shields.io/badge/render-nbviewer-orange.svg)](https://nbviewer.jupyter.org/github/LegrandNico/Cardioception/blob/master/docs/source/examples/psychophysics/2-psychophysics_group_level.ipynb)
+| Fitting the psychometric function (single subject) | [![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/LegrandNico/cardioception-toolbox/blob/master/docs/source/examples/psychophysics/1-psychophysics_subject_level.ipynb) | 
+| Fitting the psychometric function (group level) | [![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/LegrandNico/cardioception-toolbox/blob/master/docs/source/examples/psychophysics/2-psychophysics_group_level.ipynb) | 
 
 # References
 
@@ -193,7 +193,7 @@ More advanced subject and group-level Bayesian modelling approaches are describe
 
 This package is a fork of the original [Cardioception](https://github.com/embodied-computation-group/Cardioception) repository and is maintained by [Nicolas Legrand](https://github.com/LegrandNico).
 
-<img src = "https://raw.githubusercontent.com/LegrandNico/Cardioception/master/docs/source/images/AU.png" height ="100">
+<img src = "https://raw.githubusercontent.com/LegrandNico/cardioception-toolbox/master/docs/source/images/AU.png" height ="100">
 
 # Credit
 

diff --git a/docs/source/examples/R/Example scripts/Example_analysis_simple.Rmd b/docs/source/examples/R/Example scripts/Example_analysis_simple.Rmd
@@ -17,7 +17,7 @@ np <- import("numpy")
 ### **Reading in the data, here the working diectory has be where the exmaple scripts are located**
 ```{r message=FALSE}
 #This line reads in a subject result file:
-df = read_csv("https://raw.githubusercontent.com/LegrandNico/Cardioception/master/docs/source/examples/templates/data/HRD/HRD_final.txt")
+df = read_csv("https://raw.githubusercontent.com/LegrandNico/cardioception-toolbox/master/docs/source/examples/templates/data/HRD/HRD_final.txt")
 
 #These next lines read in the psi posterior distributions for each modality. 
 #These will be saved with names depending on your conditions, so modify as needed. 

diff --git a/docs/source/index.md b/docs/source/index.md
@@ -4,7 +4,7 @@
 
 ---
 
-<img src="https://raw.githubusercontent.com/LegrandNico/Cardioception/master/docs/source/images/logo.png" align="left" alt="cardioception" height="230" HSPACE=30>
+<img src="https://raw.githubusercontent.com/LegrandNico/cardioception-toolbox/master/docs/source/images/logo.png" align="left" alt="cardioception" height="230" HSPACE=30>
 
 ```{important}
 The Cardioception Python Toolbox is a fork of the [original cardioception repository](https://github.com/embodied-computation-group/Cardioception) that I ([Nicolas Legrand](https://github.com/LegrandNico/)) created while working in [the ECG lab](https://www.the-ecg.org/) from 2019 to 2022. My previous lab has taken full control of the repository since then, meaning that I am unfortunately unable to maintain it as it should be. This repository allows me to pursue the maintenance of the package, aiming to provide reliable and robust tasks to measure cardiac interoception, together with computational modelling tools to analyse data gathered with these tasks.

diff --git a/docs/source/measuring.md b/docs/source/measuring.md
@@ -6,7 +6,7 @@ Cardiac interoception has been largely investigated using the heartbeat counting
 
 In the classic "heartbeat counting task" {cite:p}`1981:schandry,1978:dale` participants attend to their heartbeats in intervals of various lengths and are asked to count the number of heartbeats they can effectively feel during this period. An accuracy score is then derived by comparing the reported number of heartbeats and the true number of heartbeats. In the original version {cite:p}`1981:schandry`, the task started with a resting period of 60 seconds and consisted of three estimation sessions (25, 35, and 45 seconds) interleaved with resting periods of 30 seconds.
 
-![hbc](https://raw.githubusercontent.com/LegrandNico/Cardioception/master/docs/source/images/HeartBeatCounting.png)
+![hbc](https://raw.githubusercontent.com/LegrandNico/cardioception-toolbox/master/docs/source/images/HeartBeatCounting.png)
 
 By default, [Cardioception](https://github.com/LegrandNico/Cardioception) implements the version used in recent publications {cite:p}`2013:hart` in which a training trial of 20 seconds is proposed, after which the 6 experimental trials of different time windows (25, 30, 35,40, 45 and 50s) occurred in a randomized order. The trial length, the condition (`'Rest'`, `'Count'`, `'Training'`), and the randomization can be controlled in the parameters dictionary. This behaviour can be controlled using the `"taskVersion"` parameter.
 
@@ -32,7 +32,7 @@ After each counting response, the participant is prompted to rate their subjecti
 
 The **Heart Rate Discrimination Task** {cite:p}`2022:legrand` implements an adaptive psychophysical measure of cardiac interoception where participants have to estimate the frequency of their heart rate by comparing it to tones that can be faster or slower. By manipulating the difference between the true heart rate and the presented tone using different staircase procedures, the bias (threshold) and precision (slope) of the psychometric function can be estimated either online or offline, together with metacognitive efficiency.
 
-![hrd](https://raw.githubusercontent.com/LegrandNico/Cardioception/master/docs/source/images/HeartRateDiscrimination.png)
+![hrd](https://raw.githubusercontent.com/LegrandNico/cardioception-toolbox/master/docs/source/images/HeartRateDiscrimination.png)
 
 ### Staircases
 

diff --git a/docs/source/stats.md b/docs/source/stats.md
@@ -61,8 +61,8 @@ examples/templates/*
 
 | Notebook | Colab |
 | --- | ---|
-| {ref}`hbc_template` | [![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/LegrandNico/Cardioception/blob/master/docs/source/examples/templates/HeartBeatCounting.ipynb)
-| {ref}`hrd_template` | [![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/LegrandNico/Cardioception/blob/master/docs/source/examples/templates/HeartRateDiscrimination.ipynb)
+| {ref}`hbc_template` | [![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/LegrandNico/cardioception-toolbox/blob/master/docs/source/examples/templates/HeartBeatCounting.ipynb)
+| {ref}`hrd_template` | [![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/LegrandNico/cardioception-toolbox/blob/master/docs/source/examples/templates/HeartRateDiscrimination.ipynb)
 
 ## Bayesian modelling of psychophysics
 
@@ -80,5 +80,5 @@ examples/psychophysics/*
 
 | Notebook | Colab |
 | --- | ---|
-| {ref}`psychophysics_subject_level` | [![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/LegrandNico/Cardioception/blob/master/docs/source/examples/psychophysics/1-psychophysics_subject_level.ipynb)
-| {ref}`psychophysics_group_level` | [![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/LegrandNico/Cardioception/blob/master/docs/source/examples/psychophysics/2-psychophysics_group_level.ipynb)
+| {ref}`psychophysics_subject_level` | [![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/LegrandNico/cardioception-toolbox/blob/master/docs/source/examples/psychophysics/1-psychophysics_subject_level.ipynb)
+| {ref}`psychophysics_group_level` | [![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/LegrandNico/cardioception-toolbox/blob/master/docs/source/examples/psychophysics/2-psychophysics_group_level.ipynb)
diff --git a/tests/test_reports.py b/tests/test_reports.py
@@ -13,7 +13,7 @@ def test_preprocessing(self):
         """Test the preprocessing function"""
         # load the main result data frame
         results = pd.read_csv(
-            "https://raw.githubusercontent.com/LegrandNico/Cardioception/master/docs/source/examples/templates/data/HRD/HRD_final.txt"
+            "https://raw.githubusercontent.com/LegrandNico/cardioception-toolbox/master/docs/source/examples/templates/data/HRD/HRD_final.txt"
             )
         preprocessing(results=results)