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Update library dependency, add alist file generation from matrix #8

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Update library dependency, add alist file generation from matrix #8

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Main modifications:

  1. Add writeToFile_Hmatrix_alist to BigGirth (See format at https://aff3ct.readthedocs.io/en/latest/user/simulation/parameters/codec/ldpc/decoder.html?highlight=alist)
  2. #include in CyclesOfGraph
  3. Rename MainPEG.o to main.o as per main.cpp
  4. Add directory that includes files for running the program on linux

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