target-generation #471
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| # Workflow derived from https://github.com/r-lib/actions/tree/v2/examples | |
| # Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help | |
| on: | |
| schedule: | |
| - cron: '0 3 * * *' | |
| workflow_dispatch: | |
| name: target-generation | |
| jobs: | |
| insitu: | |
| runs-on: ubuntu-latest | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| AWS_ACCESS_KEY_ID: ${{ secrets.OSN_KEY }} | |
| AWS_SECRET_ACCESS_KEY: ${{ secrets.OSN_SECRET }} | |
| container: rqthomas/vera-rocker:latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Generate targets | |
| shell: Rscript {0} | |
| run: | | |
| source('targets/target_generation/insitu_targets.R') | |
| inflow: | |
| runs-on: ubuntu-latest | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| AWS_ACCESS_KEY_ID: ${{ secrets.OSN_KEY }} | |
| AWS_SECRET_ACCESS_KEY: ${{ secrets.OSN_SECRET }} | |
| container: rqthomas/vera-rocker:latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Generate targets | |
| shell: Rscript {0} | |
| run: | | |
| source('targets/target_generation/inflow_targets.R') | |
| met: | |
| runs-on: ubuntu-latest | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| AWS_ACCESS_KEY_ID: ${{ secrets.OSN_KEY }} | |
| AWS_SECRET_ACCESS_KEY: ${{ secrets.OSN_SECRET }} | |
| container: rqthomas/vera-rocker:latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Generate targets | |
| shell: Rscript {0} | |
| run: | | |
| source('targets/target_generation/met_targets.R') | |
| Healthcheck: | |
| needs: [insitu, inflow, met] | |
| runs-on: ubuntu-latest | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| container: rqthomas/vera-rocker:latest | |
| steps: | |
| - name: Call Healthcheck | |
| run: | | |
| curl -m 10 --retry 5 https://hc-ping.com/251672ee-2233-4335-85b9-2133ff15c46b | |