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LS31 · Nov 11, 2020 · 316f293 · 316f293
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diff --git a/NEWS.md b/NEWS.md
@@ -2,5 +2,6 @@
 
 * Added a `NEWS.md` file to track changes to the package.
 * Added assertions and testthat tests for existing functions.
+* Improved support for `NA` values.
 * Added new calculations: CURB-65, MAP, pulse pressure, albumin-adjusted calcium, eGFR formula.
 * Updated documentation.
diff --git a/README.md b/README.md
@@ -30,14 +30,14 @@ Help and pull requests are more than welcome.
 - *Nephrology*
   - Estimate glomerular filtration rate based on creatinine clearance.
 
-# Design philosophy
+# Design ideas
 
 **Reliable**
 
 - *Explicit units for output*
   - Numeric output of a function will have a specified unit attribute (if applicable) using the [units](https://r-quantities.github.io/units/) package. 
 - *Fail-fast without assumptions*
-  - If certain conditions are not explicitly provided, err on the side of caution (e.g. a fasting state has to be provided in order for a glucose to be considered a fasting glucose). 
+  - If certain conditions are not explicitly provided, err on the side of caution (e.g. a fasting state has to be provided in order for a glucose to be considered a fasting glucose). If `NA` values are provided, functions will return `NA` unless otherwise specified.
 - *Explicit references and caveats*
   - Every function will have references and a section on caveats. (However, despite our best efforts of quality control, the functions are provided as-is, without any guarantees, and users would be wise to check the output for quality and accuracy in their use case.)
 
@@ -50,7 +50,7 @@ Help and pull requests are more than welcome.
 
 # Practical notes on the use of the unit attribute
 
-If applicable, functions will return numeric values with a unit attribute using the [units](https://r-quantities.github.io/units/) package. This is to be as explicit as possible to the end user about the generated data. However, the unit attributes may sometimes be bothersome. Use `units::drop_units(x)` to drop the unit attribute. Load the ggforce package (an extension of ggplot) if you want to incorporate the unit attribute in the scales of a ggplot figure (see [ggforce reference page Position scales for units data](https://ggforce.data-imaginist.com/reference/scale_unit.html)).
+If applicable, functions will return numeric values with a unit attribute using the [units](https://r-quantities.github.io/units/) package. The idea is to be as explicit as possible to the end user about the generated data. However, the unit attributes may sometimes be bothersome. Use `units::drop_units(x)` to drop the unit attribute. Load the ggforce package (an extension of ggplot) if you want to incorporate the unit attribute in the scales of a ggplot figure (see [ggforce reference page Position scales for units data](https://ggforce.data-imaginist.com/reference/scale_unit.html)).
 
 # How to install
 
@@ -66,7 +66,7 @@ remotes::install_github("ls31/clinicalr")
 remotes::install_github("lc31/clinicalr")
 ```
 
-# To do
+# Ideas for the future
 * effective osmolality?
 * anion gap?
 * total body water?
@@ -76,4 +76,5 @@ remotes::install_github("lc31/clinicalr")
 * A-a gradient?
 * creatinine clearance (using urine)?
 * Framingham?
-* assertion tests
+* full SOFA score?
+* Calvert formula (AUC) for carboplatin?
diff --git a/docs/index.html b/docs/index.html
diff --git a/docs/news/index.html b/docs/news/index.html
diff --git a/docs/pkgdown.yml b/docs/pkgdown.yml
@@ -2,7 +2,7 @@ pandoc: 2.7.3
 pkgdown: 1.6.1
 pkgdown_sha: ~
 articles: {}
-last_built: 2020-11-04T21:04Z
+last_built: 2020-11-11T17:03Z
 urls:
   reference: https://ls31.github.io/clinicalr//reference
   article: https://ls31.github.io/clinicalr//articles

diff --git a/docs/reference/adjust_calcium_for_albumin.html b/docs/reference/adjust_calcium_for_albumin.html
diff --git a/docs/reference/adjust_sodium_for_glucose.html b/docs/reference/adjust_sodium_for_glucose.html
diff --git a/docs/reference/calculate_bmi.html b/docs/reference/calculate_bmi.html
diff --git a/docs/reference/calculate_pulse_pressure.html b/docs/reference/calculate_pulse_pressure.html
diff --git a/docs/reference/calculate_qtc.html b/docs/reference/calculate_qtc.html
diff --git a/docs/reference/estimate_bsa.html b/docs/reference/estimate_bsa.html
diff --git a/docs/reference/estimate_gfr_ckdepi.html b/docs/reference/estimate_gfr_ckdepi.html
diff --git a/docs/reference/estimate_gfr_cockcroft.html b/docs/reference/estimate_gfr_cockcroft.html
diff --git a/docs/reference/estimate_gfr_mdrd.html b/docs/reference/estimate_gfr_mdrd.html
diff --git a/docs/reference/estimate_gfr_schwartz.html b/docs/reference/estimate_gfr_schwartz.html
diff --git a/docs/reference/estimate_ibw.html b/docs/reference/estimate_ibw.html
diff --git a/docs/reference/estimate_map.html b/docs/reference/estimate_map.html
diff --git a/docs/reference/has_metabolic_syndrome_atpiii.html b/docs/reference/has_metabolic_syndrome_atpiii.html
diff --git a/docs/reference/score_curb65.html b/docs/reference/score_curb65.html
diff --git a/docs/reference/score_qsofa.html b/docs/reference/score_qsofa.html
diff --git a/man/adjust_calcium_for_albumin.Rd b/man/adjust_calcium_for_albumin.Rd
diff --git a/man/adjust_sodium_for_glucose.Rd b/man/adjust_sodium_for_glucose.Rd
diff --git a/man/calculate_bmi.Rd b/man/calculate_bmi.Rd
diff --git a/man/calculate_pulse_pressure.Rd b/man/calculate_pulse_pressure.Rd
diff --git a/man/calculate_qtc.Rd b/man/calculate_qtc.Rd
diff --git a/man/estimate_bsa.Rd b/man/estimate_bsa.Rd
diff --git a/man/estimate_gfr_ckdepi.Rd b/man/estimate_gfr_ckdepi.Rd
diff --git a/man/estimate_gfr_cockcroft.Rd b/man/estimate_gfr_cockcroft.Rd
diff --git a/man/estimate_gfr_mdrd.Rd b/man/estimate_gfr_mdrd.Rd
diff --git a/man/estimate_gfr_schwartz.Rd b/man/estimate_gfr_schwartz.Rd
diff --git a/man/estimate_ibw.Rd b/man/estimate_ibw.Rd
diff --git a/man/estimate_map.Rd b/man/estimate_map.Rd
diff --git a/man/has_metabolic_syndrome_atpiii.Rd b/man/has_metabolic_syndrome_atpiii.Rd
diff --git a/man/score_curb65.Rd b/man/score_curb65.Rd
diff --git a/man/score_qsofa.Rd b/man/score_qsofa.Rd