[pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

surfactant/cmd/generate.py

@@ -6,19 +6,18 @@
 import pathlib
 import queue
 import re
-from enum import Enum, auto
 from typing import Any, Dict, Iterable, List, Optional, Tuple, Union
 
 import click
 from loguru import logger
 
 from surfactant import ContextEntry
+from surfactant.cmd.internal.generate_utils import SpecimenConfigParamType
 from surfactant.configmanager import ConfigManager
 from surfactant.fileinfo import sha256sum
 from surfactant.plugin.manager import call_init_hooks, find_io_plugin, get_plugin_manager
 from surfactant.relationships import parse_relationships
 from surfactant.sbomtypes import SBOM, Software
-from surfactant.cmd.internal.generate_utils import SpecimenConfigParamType
 
 
 # Converts from a true path to an install path

surfactant/cmd/internal/generate_utils.py

@@ -2,12 +2,12 @@
 # See the top-level LICENSE file for details.
 #
 # SPDX-License-Identifier: MIT
-import os
 import json
+import os
 import pathlib
 
 import click
-from loguru import logger
+
 
 class SpecimenConfigParamType(click.Path):
     """
@@ -40,7 +40,7 @@ def _get_param_type(filename: str):
             tuple: A 3-tuple containing:
                 - str: The parameter type ('FILE', 'DIR', 'CONFIG', or '' for default)
                 - Path: The filepath as a Path object
-                - Path or None: The install prefix path (for files), directory path (for dirs), 
+                - Path or None: The install prefix path (for files), directory path (for dirs),
                   or None (for config or default)
         """
 
@@ -60,7 +60,7 @@ def convert(self, value, param, ctx):
         # value received may already be the right type
         if isinstance(value, list):
             return value
-        
+
         param_type, filepath, installprefix = self._get_param_type(value)
 
         # validate filepath exists and is readable
@@ -96,7 +96,9 @@ def convert(self, value, param, ctx):
                 try:
                     config = json.load(f)
                 except json.decoder.JSONDecodeError as err:
-                    self.fail(f"{filepath.as_posix()!r} config file contains invalid JSON", param, ctx)
+                    self.fail(
+                        f"{filepath.as_posix()!r} config file contains invalid JSON", param, ctx
+                    )
 
                 for entry in config:
                     extract_path = entry["extractPaths"]
@@ -106,5 +108,5 @@ def convert(self, value, param, ctx):
                             self.fail(f"invalid extract path in config file: {pth}", param, ctx)
         else:
             self.fail(f"{value!r} is not a valid specimen config type", param, ctx)
-        
-        return config
+
+        return config