new cli get-via-api

kg_microbe/run.py

@@ -1,4 +1,5 @@
 """Drive KG download, transform, merge steps."""
+
 import os
 
 import click
@@ -8,6 +9,7 @@
 from kg_microbe.query import parse_query_yaml, result_dict_to_tsv, run_query
 from kg_microbe.transform import DATA_SOURCES
 from kg_microbe.transform import transform as kg_transform
+from kg_microbe.utils.s3_utils import run_api
 
 
 @click.group()
@@ -112,6 +114,18 @@ def query(
     result_dict_to_tsv(result_dict, outfile)
 
 
+@main.command("get-via-api")
+@click.option("api", "-a", required=True, default="uniprot", multiple=False)
+def get_data_via_api(api: str) -> None:
+    """
+    Get data via rest API.
+
+    :param api: A string pointing to the API to upload data to.
+    :return: None
+    """
+    run_api(api)
+
+
 @main.command()
 @click.option(
     "nodes",