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add madin_etal necessary files
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bsantan committed Aug 20, 2024
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object_id object_label traits_dataset_term action
CHEBI:28885 butan-1-ol butanol REPLACE
CHEBI:51850 Methyl pyruvate pyruvic acid methyl ester REPLACE
CHEBI:16000 ethanolamine 2-aminethanol REPLACE
CHEBI:30832 adipic acid adipate REPLACE
CHEBI:18276 dihydrogen H2_CO2 SUPPLEMENT
CHEBI:18276 dihydrogen H2_methanol SUPPLEMENT
27 changes: 27 additions & 0 deletions kg_microbe/transform_utils/madin_etal/metabolism_map.yaml
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- ID: oxygen:anaerobe
ActualTerm: anaerobic
PreferredTerm: anaerobe

- ID: oxygen:anaerobe
ActualTerm: strictly anaerobic
PreferredTerm: anaerobe

- ID: oxygen:obligate_anaerobe
ActualTerm: obligate anaerobic
PreferredTerm: obligate anaerobe

- ID: oxygen:facultative_anaerobe
ActualTerm: facultative
PreferredTerm: facultative anaerobe

- ID: oxygen:obligate_aerobe
ActualTerm: obligate aerobic
PreferredTerm: obligate aerobe

- ID: oxygen:aerobe
ActualTerm: aerobic
PreferredTerm: aerobe

- ID: oxygen:microaerophile
ActualTerm: microaerophilic
PreferredTerm: microaerophilic

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