Reference proteome addition #148

	name: kg-microbe QC

	on:
	push:
	branches: [ master ]
	pull_request:
	branches: [ master ]
	workflow_dispatch:

	jobs:
	build:
	runs-on: ubuntu-latest
	strategy:
	matrix:
	python-version: [ "3.8", "3.9", "3.10" ]

	steps:
	- uses: actions/[email protected]

	- name: Set up Python ${{ matrix.python-version }}
	uses: actions/setup-python@v3
	with:
	python-version: ${{ matrix.python-version }}

	- name: Install Poetry
	uses: snok/install-poetry@v1

	- name: Install dependencies
	run: poetry install --no-interaction

	- name: Run CodeSpell
	run: poetry run tox -e codespell

	- name: Linting
	run: poetry run tox -e lint

	- name: Test with pytest and generate coverage file
	run: poetry run tox -e py

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