Uniprot to S3 #16

	name: Uniprot to S3

	on:
	# schedule:
	# - cron: '0 0 1 * *' # Runs on the 1st of every month at midnight
	workflow_dispatch: # Allows manual triggering

	jobs:
	fetch-and-upload:
	runs-on: ubuntu-latest
	strategy:
	matrix:
	python-version: [ "3.10" ]
	steps:
	- name: Checkout code
	uses: actions/[email protected]

	- name: Set up Python ${{ matrix.python-version }}
	uses: actions/setup-python@v3
	with:
	python-version: ${{ matrix.python-version }}

	- name: Install Poetry
	uses: snok/install-poetry@v1

	- name: Install dependencies
	run: poetry install --no-interaction

	- name: Install additional dependencies
	run: poetry install --with s3

	# - name: Fetch data from Uniprot API
	# run: kg get-via-api -a uniprot

	- name: Upload to S3
	uses: aws-actions/configure-aws-credentials@v1
	with:
	aws-access-key-id: ${{ secrets.AWS_ACCESS_KEY_ID }}
	aws-secret-access-key: ${{ secrets.AWS_SECRET_ACCESS_KEY }}
	aws-region: us-east-1
	- name: Sync files to S3 bucket
	run: \|
	aws s3 sync data/raw/uniprot/test s3://${{ secrets.AWS_BUCKET_NAME }} --delete

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