Use GH workflow to populate Uniprot data into an S3 bucket #83
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name: kg-microbe QC | |
on: | |
push: | |
branches: [ master ] | |
pull_request: | |
branches: [ master ] | |
workflow_dispatch: | |
jobs: | |
build: | |
runs-on: ubuntu-latest | |
strategy: | |
matrix: | |
python-version: [ "3.8", "3.9", "3.10" ] | |
steps: | |
- uses: actions/[email protected] | |
- name: Set up Python ${{ matrix.python-version }} | |
uses: actions/setup-python@v3 | |
with: | |
python-version: ${{ matrix.python-version }} | |
- name: Install Poetry | |
uses: snok/install-poetry@v1 | |
- name: Install dependencies | |
run: poetry install --no-interaction | |
- name: Run CodeSpell | |
run: poetry run tox -e codespell | |
- name: Check static typing with MyPy | |
run: poetry run tox -e lint | |
- name: Test with pytest and generate coverage file | |
run: poetry run tox -e py |