Discussions

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  No negative control pair passes pairwise QC.

  AAAAAbetter asked Oct 16, 2024 in Q&A · Unanswered

  

  

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  High MOI vs Low MOI

  jpulecio asked Oct 11, 2024 in Q&A · Answered

  

  

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  NonZero assignment

  jpulecio asked Oct 4, 2024 in Q&A · Answered

  

  

  

  

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  non-targeting gRNAs

  nhu-github announced Oct 10, 2024 in Announcements

  

  

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  visualizing sgRNA-response pairs with Nextflow output

  nlthanhthanh asked Oct 1, 2024 in Q&A · Closed · Unanswered

  

  

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  6.3 Visualizing the results for individual pairs plotting error

  yabeykoon asked Sep 16, 2024 in Q&A · Answered

  

  

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  Nextflow error

  yabeykoon asked Jul 11, 2024 in Q&A · Answered

  

  

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  gene_position_data_frame contains Ensembl id's, is it possible to add gene names

  Saranya-Balachandran asked Sep 11, 2024 in Q&A · Answered

  

  

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  Data without gRNA UMI count matrix

  Larrycpan asked Aug 30, 2024 in Q&A · Answered

  

  

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  Include cells with 2+ guides in low MOI analysis

  argschwind asked Aug 15, 2024 in Q&A · Unanswered

  

  

  

  

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  High MOI control group complement set sgRNA specifics

  yabeykoon asked Jul 14, 2024 in Q&A · Answered

  

  

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  Formula to exclude certain clusters?

  yabeykoon asked Jun 19, 2024 in Q&A · Answered

  

  

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  Determine interactions of multiple sgRNAs on expression?

  josiegleeson asked Jul 8, 2024 in Q&A · Answered

  

  

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  Trans-effect caculation

  nhu-github asked Jun 25, 2024 in Q&A · Answered

  

  

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  sceptre default covariate model

  redbybeing asked May 31, 2024 in Q&A · Answered

  

  

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  bonferroni gRNA integration explanation / significant non-targeting pairs

  sweavs111 asked May 9, 2024 in Q&A · Answered

  

  

  

  

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  Analysis based on group.by gRNAs

  nhu-github asked Apr 30, 2024 in Q&A · Answered

  

  

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  Is there a way to access the negative binomial distribution parameters from the sceptre object

  jamesgalante asked Apr 27, 2024 in Q&A · Answered

  

  

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  Run calibration issues

  VeronicaYumiceba asked Apr 30, 2024 in Q&A · Answered

  

  

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  Set analysis parameters hg19/hg38?

  yabeykoon asked Apr 29, 2024 in Q&A · Answered

  

  

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  Skip "assign_gRNA" step in local laptop

  nhu-github asked Apr 26, 2024 in Q&A · Answered

  

  

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  confidence intervals and total (not just non-zero cell) counts

  ejagoda14 asked Apr 26, 2024 in Q&A · Answered

  

  

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  Option to include cells with 0 counts for the target in pairwise QC

  redbybeing asked Apr 12, 2024 in Q&A · Answered

  

  

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  construct_cis_pairs function

  VeronicaYumiceba asked Apr 8, 2024 in Q&A · Answered

  

  

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  Welcome to sceptre discussions!

  ekatsevi announced Oct 19, 2023 in Announcements

  

  

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