compute-reporting-triangles #352

	name: "compute-reporting-triangles"
	on:
	workflow_dispatch:
	schedule:
	- cron: "30 8,13,16,18 * * 4"


	jobs:
	build:
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@main

	- name: Setup Python
	uses: actions/setup-python@main
	with:
	python-version: '3.x'

	- name: Install requirements
	run: \|
	pip3 install numpy pandas epiweeks tqdm pathlib

	- name: Get latest data
	run: \|
	cd ./code
	python ./get_latest_data.py

	- name: Compute reporting triangles
	run: \|
	cd ./code
	python3 ./reporting_triangles.py

	- name: Preprocess reporting triangle
	run: \|
	cd ./code
	python ./preprocess_reporting_triangles.py

	- name: Commit files
	env:
	AUTH: ${{ secrets.GITHUB_TOKEN }}
	run: \|
	git config --local user.email "[email protected]"
	git config --local user.name "GitHub Action"
	git remote rm origin
	git remote add origin https://${AUTH}@github.com/KITmetricslab/RESPINOW-Data.git > /dev/null 2>&1
	git pull origin main
	git add --all
	git commit --allow-empty -m "Update reporting triangles"

	- name: Push changes
	run: \|
	git push --quiet --set-upstream origin HEAD:main
	echo "pushed to github"

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