Integrated-Upstream-Metagenomic-Analysis-Pipeline-within-a-Snakemake-Workflow

Project Overview

This project integrates two comprehensive workflows for metagenomic analysis:

• Read-Length-Based Metagenomic Analysis
• Assembly-Based Metagenomic Analysis

Key Components

Reference Database Configuration

• Setup and manage reference databases essential for accurate metagenomic profiling.
• Upstream Data Analysis

Perform initial data processing and analysis to prepare for downstream applications.

Final Output

The pipeline culminates in the generation of matrix files that are ready for direct downstream visualization, facilitating seamless data interpretation and further analysis.