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With this patch the file mode of files in relocatable folders are recorded when the file is originally read. When the underlying folder is removed and the contents are written to scratch space, the original file mode is set on the new files.
Opening as a draft because: i) I don't know (yet) how this interacts with packages that are
Pkg.add
ed (the package manager makes all files read only) and ii) don't know what happens on Windows.