MedPipe3D_JSOC_proposal #2014
MedPipe3D_JSOC_proposal #2014
Conversation
There was a problem hiding this comment.
Adding JSOC proposal. Suggested reviewer Jacob Zelko
@TheCedarPrince Cedar prince do not display on ossible reviewer list
jsoc/gsoc/medpipe3d.md
Outdated
| @@ -0,0 +1,82 @@ | |||
| # MedPipe3D Projects | |||
|
|
|||
| MedPipe3D.jl together with MedEye3D.jl MedEval3D.jl and currently in development MedImage.jl is a set of libraries created to provide essential tools for 3D medical imaging to the Julia language ecosystem. Recently all of the projects migrated also to the JuliaHealth organization to improve packages visibility and promote interoperability. | |||
There was a problem hiding this comment.
Some comments on this piece:
- Could you link the repositories here for each package you mentioned?
- Could you make a markdown list to explain what (in just a few words) what each package does generally?
- I'd remove the line about package migration.
jsoc/gsoc/medpipe3d.md
Outdated
There was a problem hiding this comment.
Could you actually make the PR against this file: https://github.com/JuliaLang/www.julialang.org/blob/c35d1b42090ce631a46a221996446d3ecc9c6700/jsoc/gsoc/juliahealth.md?plain=1 ?
And then add a section for the Medical Imaging Subecosystem with the projects you have here listed underneath it?
jsoc/gsoc/medpipe3d.md
Outdated
| - **Suggested Skills and Background**: | ||
| - Experience with Julia | ||
| - Basic familiarity with computer graphics preferably OpenGL | ||
| - Some experience with 3d volumetric data with spatial metadata (or a willingness to learn!) |
There was a problem hiding this comment.
Just a suggestion, but in the past, students have found it helpful when I list what packages to be familiar with as well as any links to requisite background knowledge (youtube videos, articles, etc.). Might want to consider adding them in.
jsoc/gsoc/medpipe3d.md
Outdated
| ### Project 2: Adding dataset-wide functions and integrations of augmentations | ||
|
|
||
| **Description:** | ||
| MedPipe3D was created as a package that improves integration between other parts of the small ecosystem (MedEye3D, MedEval3D, and MedImage). Currently, it needs to be expanded and adapted so it can be a basis for a fully functional medical imaging pipeline. |
There was a problem hiding this comment.
Could you expand this description further to say in what ways it needs to be expanded/adapted?
jsoc/gsoc/medpipe3d.md
Outdated
| This set of changes although time-consuming to implement should not pose a significant issue to anybody with experience with the Julia programming language. However, implementing those will be a huge step in making Julia language a good alternative to Python in developing end-to-end medical imaging segmentation algorithms. | ||
|
|
||
| - **Success criteria and time needed:** How the success of functionality described above is defined and the approximate time required for each. | ||
| For each point mentor will also supply the person responsible for implementation with examples of required functionalities in Python or will point to the Julia libraries already implementing it (that just need to be integrated). |
Adding JSOC proposal.